Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2076 ATGAGTAGGCCAGGAGATTGGAACTGCAGGACATGCAACCACCTCAACTTCCAAAGAAGGGAATCATGCCAACGGTGCGGCGAGCCCAGGGGCGTCGGCGCCGGTGCCGGTGGAGACTATGGTGGAGCCTTTGGTGGTAGAGGCTCCTCCTCTTTCGGCTTCACCACCGGCCCCGATGTTCGCCCTGGAGACTGGTACTGCACCGTTGGCAATTGTGGAGCCCACAACTTCGCAAGCCGGTCTAGCTGCTTCAAGTGTGGTGCTCCCAAGGAGGACTCCTCCGCCGCCGGATTTGACGCCGACATTCCTCGAACTAGAGGCTATAGCTTTGCCGGCACCACTGCTGCTCGCCCTGCTTGGAAATCCGGCGACTGGATATGTACCAGGTCTGGATGCAATGAGCATAACTTTGCAAATAGAATGGAATGCTATCGATGCAATGCACCAAGGGACTCTTCTAGTTCTAGGCCTCCCTATTCATCCTAG 486 0.5658 MSRPGDWNCRTCNHLNFQRRESCQRCGEPRGVGAGAGGDYGGAFGGRGSSSFGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAAGFDADIPRTRGYSFAGTTAARPAWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSSRPPYSS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2076 161 PANTHER ZINC FINGER PROTEIN 1 153 - -
Amo08g2076 161 Gene3D - 56 93 - -
Amo08g2076 161 Gene3D - 115 153 - -
Amo08g2076 161 Gene3D - 2 32 - -
Amo08g2076 161 ProSitePatterns Zinc finger RanBP2-type signature. 125 146 IPR001876 -
Amo08g2076 161 SUPERFAMILY Ran binding protein zinc finger-like 57 93 IPR036443 -
Amo08g2076 161 PANTHER BNAA03G57490D PROTEIN 1 153 - -
Amo08g2076 161 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
Amo08g2076 161 ProSiteProfiles Zinc finger RanBP2 type profile. 61 92 IPR001876 -
Amo08g2076 161 SUPERFAMILY Ran binding protein zinc finger-like 116 153 IPR036443 -
Amo08g2076 161 SMART zf_4 123 149 IPR001876 -
Amo08g2076 161 SMART zf_4 63 89 IPR001876 -
Amo08g2076 161 SMART zf_4 5 29 IPR001876 -
Amo08g2076 161 ProSitePatterns Zinc finger RanBP2-type signature. 65 86 IPR001876 -
Amo08g2076 161 ProSiteProfiles Zinc finger RanBP2 type profile. 121 152 IPR001876 -
Amo08g2076 161 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Amo08g2076 161 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Amo08g2076 161 Pfam Zn-finger in Ran binding protein and others 3 30 IPR001876 -
Amo08g2076 161 Pfam Zn-finger in Ran binding protein and others 121 150 IPR001876 -
Amo08g2076 161 Pfam Zn-finger in Ran binding protein and others 61 92 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2076 Amo-Chr8 33527212 33528237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2076 - - gmx:100811107 264.618