Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2067 ATGGTTATAAACCCTCGTTGTATTTCCATTCTGGTTTCTCGACGCTACACACCACAACACCAACAAATTAATACTTCATCATCTTCTTCTCCTTCGCATACTCTCATGGCTTTGCCGAATCAGCAAACCGTCGATTACCCTAGCTTCAAGCTCGTTATCGTCGGCGATGGTGGAACAGGAAAGACCACATTTGTGAAGAGACATCTTACTGGTGAATTCGAGAAGAAATATGAACCAACCATTGGTGTGGAGGTCCACCCATTGGATTTTTTCACAAACTGCGGGAAGATTCGTTTCTATTGCTGGGATACTGCTGGCCAAGAGAAGTTTGGTGGTTTGAGAGATGGATATTATATCCATGGGCAATGTGCGATCATAATGTTTGATGTCACTGCCCGGTTGACTTATAAAAACGTCCCTACTTGGCACCGTGATCTTTGCCGGGTCTGTGAAAACATCCCAATTGTTCTCTGCGGTAACAAGGTTGATGTGAAGAACAGACAAGTGAAAGCAAAGCAGGTTACCTTCCACAGGAAGAAGAATTTGCAGTACTATGAAATATCGGCCAAGAGCAACTATAACTTTGAGAAGCCTTTCCTTTACCTTGCCAGGAAGCTTGCAGGCGATCCCAACTTGCATTTCGTAGAGTCACCTGCCCTGGCTCCTCCAGAAGTTCAAATCGATTTGGCCGCGCAACAACAGCATGAAGCCGAGCTTGCTCAAGCTGCTAACCAGCCACTTCCCGATGATGATGATGACACATTTGAGTAA 771 0.4527 MVINPRCISILVSRRYTPQHQQINTSSSSSPSHTLMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAANQPLPDDDDDTFE* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2067 256 SMART ran_sub_2 54 255 - -
Amo08g2067 256 TIGRFAM small_GTP: small GTP-binding protein domain 49 199 IPR005225 GO:0005525
Amo08g2067 256 Gene3D - 38 254 IPR027417 -
Amo08g2067 256 SMART rab_sub_5 49 209 - -
Amo08g2067 256 ProSiteProfiles small GTPase Ran family profile. 42 206 IPR002041 GO:0003924|GO:0005525|GO:0006913
Amo08g2067 256 SMART rho_sub_3 51 205 IPR001806 GO:0003924|GO:0005525
Amo08g2067 256 PANTHER GTP-BINDING NUCLEAR PROTEIN 23 256 - -
Amo08g2067 256 SMART ras_sub_4 46 209 - -
Amo08g2067 256 ProSiteProfiles small GTPase Ras family profile. 40 240 IPR001806 GO:0003924|GO:0005525
Amo08g2067 256 ProSiteProfiles small GTPase Rab1 family profile. 43 256 - -
Amo08g2067 256 CDD Ran 49 214 - -
Amo08g2067 256 PANTHER RAN GTPASE 23 256 IPR002041 GO:0003924|GO:0005525|GO:0006913
Amo08g2067 256 Pfam Ras family 50 206 IPR001806 GO:0003924|GO:0005525
Amo08g2067 256 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 62 76 IPR002041 GO:0003924|GO:0005525|GO:0006913
Amo08g2067 256 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 109 127 IPR002041 GO:0003924|GO:0005525|GO:0006913
Amo08g2067 256 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 129 150 IPR002041 GO:0003924|GO:0005525|GO:0006913
Amo08g2067 256 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 165 183 IPR002041 GO:0003924|GO:0005525|GO:0006913
Amo08g2067 256 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 203 225 IPR002041 GO:0003924|GO:0005525|GO:0006913
Amo08g2067 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 230 IPR027417 -
Amo08g2067 256 MobiDBLite consensus disorder prediction 234 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2067 Amo-Chr8 33425090 33427725 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2067 K07936 - mnt:21408331 451.055