Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2008 ATGGCCGTTCCCTTCTTCAAAACAACATTTGTTCCATCTCTTTCCGCTAGAACCACCACTCGCATCACTCCTTCAAAGTCCACAATAGCCTTCATTCGCTTCCTCACATTCTCAACAATGAACTCATCGCCATCGATCTACCGCGTGCCAGACCTAGGTGCAAACGATATGGACCGTGTGGCAGACCACACTTTCCGAACCTACAATGCAAATGTGGCCAAGAGAAGTGGTAAAGGGACGGCAATTGTGTGGTTCAGAAATGATCTGAGGGTCTTAGACAATGAAGTTCTCTACAAAGCGTGGCTCTCTTCGGAAACTCTCTTACCCGTTTTCTGTGTTGATCCTCGCCTCTTTTCCACCACTTACCACTTTGGTTTTCCCAAAACTGGAGCATTGAGAGCTCAATTTTTCGTCGAATGCTTGGCCGACTTGAGGAAGAACTTGACAAAATTTGGACTTAATTTGCTTATACAACACGGAAAGCCTGAAGATATTCTTCCTTCTCTAGCTAAAGCTTTCAAAGCTCATACAGTGTATGCCCAGAAAGAAACCTGCAGTGAGGAGCTGAACGTTGAAAGATTAGTCAGCAAAGGTCTTCGACAAGTAGCAATGCCATCCGGGGAATCTAGTAGTTCAACGAATTCAAACAACTTCCCCAAGTTACAATTGATTTGGGGTACCACCTTGTACCACATAGATGACCTTCCTTTTGATGCCGGTAGTTTGCCGGACGTGTATACTCAATTTCGTAAGACTGTCGAGGCGAAGTGTTCGATACGTCCGTGCATCAAACTTCCTGTGTTGCTTGGACCTCCTCCACTTGTTGAGGATTGGGGGTGTGTTCCTTCATTAGAGAAGCTGGGACTTAGCTCACAGAATGTTAGCAAGGGGATGAAATTTGTAGGAGGTGAAACTGCGGCGTTGAGCAGAGTATATGAATACTTTTGGAAGAAGGATTTGCTAAAGGTATATAAAGAGACCAGAAATGGAATGTTAGGACCTGATTACTCCACTAAGTTCTCACCATGGCTTGCATTTGGAAGCTTGTCTCCTCGTTTAATACACGAAGAGGTGAAGAGATATGAGAAGGAAAGGATAGCAAATGGTTCTACATACTGGGTCTTGTTTGAGTTGATATGGAGGGATTACTTCCGGTTTTTATCGGTGAAATATGGGAATTCAATTTTCTATTTAGGTGGCCCTAGGAAGGTTCAGCAGAAGTGGAGCCAAGACAAGATTTTGTTTGAATCATGGAGAGACGGCCGTACCGGATATCCTTTGATTGATGCCAATATGAAAGAACTATCAACAACAGGGTTTATGTCAAACCGAGGACGGCAGATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATAGATTGGCGAATGGGAGCAGAGTGGTTCGAGACGTGTCTTCTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGTTCAGGAGTTGGGAATGATCCAAGAGAAGATCGATATTTCAGCATTCCGAAACAAGCACAAACATATGATCCGGAAGGAGAATACGTTGCATACTGGTTGCCACGACTGCAAACAATTCCGAAAGAGAAAAGGAACTTTCCTGGAAATTTATACATCCGTCAAATTGTGCCTCTCAAGTATGGTAGACTCCAGAATGACGGCGCAAGAAGCAGCAATGATAGAAGGAATGACAGAAGATGGAACAGGAACTAA 1713 0.4378 MAVPFFKTTFVPSLSARTTTRITPSKSTIAFIRFLTFSTMNSSPSIYRVPDLGANDMDRVADHTFRTYNANVAKRSGKGTAIVWFRNDLRVLDNEVLYKAWLSSETLLPVFCVDPRLFSTTYHFGFPKTGALRAQFFVECLADLRKNLTKFGLNLLIQHGKPEDILPSLAKAFKAHTVYAQKETCSEELNVERLVSKGLRQVAMPSGESSSSTNSNNFPKLQLIWGTTLYHIDDLPFDAGSLPDVYTQFRKTVEAKCSIRPCIKLPVLLGPPPLVEDWGCVPSLEKLGLSSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGSLSPRLIHEEVKRYEKERIANGSTYWVLFELIWRDYFRFLSVKYGNSIFYLGGPRKVQQKWSQDKILFESWRDGRTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPRLQTIPKEKRNFPGNLYIRQIVPLKYGRLQNDGARSSNDRRNDRRWNRN* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2008 570 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 78 278 IPR036155 -
Amo08g2008 570 Pfam DNA photolyase 81 260 IPR006050 -
Amo08g2008 570 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 397 551 - -
Amo08g2008 570 PANTHER CRYPTOCHROME 67 547 IPR002081 -
Amo08g2008 570 Gene3D HUPs 44 226 IPR014729 -
Amo08g2008 570 PRINTS DNA photolyase signature 482 496 IPR002081 -
Amo08g2008 570 PRINTS DNA photolyase signature 423 439 IPR002081 -
Amo08g2008 570 PRINTS DNA photolyase signature 443 461 IPR002081 -
Amo08g2008 570 PANTHER CRYPTOCHROME DASH 67 547 - -
Amo08g2008 570 TIGRFAM crypto_DASH: cryptochrome, DASH family 80 522 IPR014133 GO:0003913|GO:0006281
Amo08g2008 570 MobiDBLite consensus disorder prediction 555 570 - -
Amo08g2008 570 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 298 536 IPR036134 -
Amo08g2008 570 Pfam FAD binding domain of DNA photolyase 376 531 IPR005101 -
Amo08g2008 570 Gene3D - 227 396 - -
Amo08g2008 570 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 79 212 IPR006050 -
Amo08g2008 570 MobiDBLite consensus disorder prediction 551 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2008 Amo-Chr8 32388212 32394586 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2008 K25656 - gmx:100783312 908.286