Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2002 ATGGAAGGTTCTGGAAGCAGCGTTTCGGCGTCATCATCGGCAGCGATGGCGCAACAAACATGGGAGCTGGAAAACAACATAATACCCATGGACACACCACCTTCCGGCGCCGACGACTCCATCTTCTACTACGACGAGTCACTCCAAGGAGAGTACCAGCGCGAAAAGCCATGGTCCAACGACCCTCACTACTTCAAGCGCGTCAAGGTTTCCGCTCTCGCGTTACTCAAGATGGTTGTTCACGCGCGTTCTGGCGGCACCATCGAGGTCATGGGTCTCATGCAAGGCAAGATCGACGGTGACTCTATCATCGTCATGGATGCTTTTGCTTTGCCCGTTGAGGGAACCGAAACGCGTGTCAATGCCCAAGCTGATGCGTATGAGTACAGTGTTGAGTATGATCAGACCAACAAGCGTGCTGGGAGATTGGAAAATGTTGTTGGGTGGTATCACTCTCACCCTGGTTATGGGTGCTGGCTTTCTGGTATAGATGTGTCGACACAGATGCTCAATCAGCAGTTTCAGGAGCCCTTTCTGGCTGTTGTTATTGACCCCACTAGGACTGTTTCTGCTGGGAAAGTTGAGATTGGGGCCTTCAGGACATACCCTGAAGGGTATAAGCCTCCTGATGATCCTATTTCCGAGTACCAAACCATACCCCTCAATAAGATTGAAGACTTTGGTGTCCATTGTAAACAGTATTATTCATTGGATATCACTTACTTTAAGTCTTCTCTTGATTCACACCTCTTGGATCTGCTATGGAACAAATATTGGGTGAATACGCTTTCTTCTTCCCCCCTATTGGGTAATGGGGACTATGTTGCTGGACAAATCTCAGATTTAGCTGAAAAATTAGAACAAGCAGAGACTCAATTGGCGCATGCACGCTTTGGACCATTATTAGCACCTGCTCCGAGAAAGAAAGAATTCATGCGACAAATTAAGGCTTTAAGGGAAGAGTCTCCGCTCGCTAAGATTACTCGTGATGGTGCAAAAATTACTGTGGAGCAAGTGCATGGACTAATGTCACAGGTAATCAAGGATATTCTATTCAACTCTGTTCAATCAAGTAGGTCTCGCACAGAAACATCTGGCCCTGAGCCCATGATTGAAAGTTGA 1122 0.4733 MEGSGSSVSASSSAAMAQQTWELENNIIPMDTPPSGADDSIFYYDESLQGEYQREKPWSNDPHYFKRVKVSALALLKMVVHARSGGTIEVMGLMQGKIDGDSIIVMDAFALPVEGTETRVNAQADAYEYSVEYDQTNKRAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAETQLAHARFGPLLAPAPRKKEFMRQIKALREESPLAKITRDGAKITVEQVHGLMSQVIKDILFNSVQSSRSRTETSGPEPMIES* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2002 373 SMART pad1_6 67 204 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo08g2002 373 SUPERFAMILY JAB1/MPN domain 67 204 - -
Amo08g2002 373 ProSiteProfiles MPN domain profile. 68 205 IPR037518 -
Amo08g2002 373 Pfam Cop9 signalosome subunit 5 C-terminal domain 264 353 IPR040961 -
Amo08g2002 373 PANTHER BNAC07G13420D PROTEIN 31 360 IPR037740 GO:0004222|GO:0008180
Amo08g2002 373 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 31 360 - -
Amo08g2002 373 CDD MPN_RPN11_CSN5 57 295 - -
Amo08g2002 373 Gene3D Cytidine Deaminase, domain 2 9 270 - -
Amo08g2002 373 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 65 176 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2002 Amo-Chr8 32339843 32344235 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2002 K09613 - gmx:100784909 644.81