Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1623 ATGGCGGCAGCACCTGCAGTAACTGCCCTGAACGGGTTGAAGGTGACGCAAGCATACCTGGAAGGGAAGGCAGTTAAGGAAACAAAAGTTCTCATGGCCGAACTCTGCCGCCAATTCTACACCCTCGGATGGGTCTCTGGGACAGGTGGCAGCATCGCCTTCAAGGTCCACGATGACTCCATTCCCAAGTCTCAACAACTCATACTCATGTCCCCTTCTGGTGTTCAGAAGGAAAGAATGGAACCGGAGGACATGTATGTGTTGTCGCACAATGGATCAGTCTTGTCTGCCCCATCTGCCAAACCTTACCCGCACAAGCCTCCCAAGTGTTCTGATTCTAGTCCAGTGTTCTTGAAGGCATATGAGTTGCGGGATGCTGGGGCTGTTATTCACAGTCACGGGATAGAATCTTGTCTTGTAACAATGATCAATCCTCTATCAAAGGAATTTCGAATCACTCACATGGAAATGATAAAAGGAATCAAGGGACATGGTTATTATGATGAACTTGTGGTCCCCATAATTGAGAACACGGCCTATGAATATGAGCTCACAGATTCTCTAGCTAAAGCTATTGAAGCCTACCCAAAATCAACAGCAGTTCTTGTTCGCAACCATGGGGTATATGTTTGGGGAGATACATGGATCAGTGCTAAAACCCAGACTGAGTGTTATCACTACCTCTTTGATGCTGCTATAAAACTTCACCAAATGGGATTAGACTGGTCCGCTCCAAACCATGGTCCAATACAAAGTGCAAGAAGTAGTCTAAGGATTGCCGGGGAGTCAAACTTTTCAGTTAAGGCAAAGAAAGATAATGGTGATACTGATCCATTCCCACGTTGCATTGTTCTCGACATTGAAGGAACTACTACACCCATATCATTTGTTTCAGAAGTTCTCTTTCCATATGCCCGTGATAATGTTGGGAGGCATCTATCTCTGACATATGATACTCCCGATACTCAAAATGATATCAAGTTGCTTCGTTCGCAGGTTGAAAGTGACCTTGAACAAGGGGTTCCAGGTGCGGTGCCTATCCCCTCTGATGATGCTGGAAAAGAGGAAGTCATTGCAGCTCTAGTTGCTAATGTGGATGCCATGATCAAAGCTGATAGAAAGATCACTGCCCTGAAAGAGTTGCAGGGTCATATATGGCGAACTGGTTATGAGAAGGACGAACTGGAGGGAATAGTTTATGATGATGTACCAGAAGCCCTAGAAAAATGGCACGCCTTGGGCATAAAGGTATACATATATTCTAGTGGTAGCAGGTTGGCGCAAAGGCTAATATTTGGAAAAACTAACCATGGGGACCTAAGAAAATACTTATCTGGGTTTTTTGACACCACAGTGGGGAACAAAAAGGAGACACGTAGTTATGTTGAAATTTCTGAGTCACTTGGCGTTGATAAACCATCAGATATTTTATTTGTCACTGATGTCTATCAAGAAGCTACAGCTGCTAAGGGAGCAGGTTTGGAGGCTGTCATTTCAATTCGACCCGGAAATGGACCCCTCCCTGAAAATCATGGATTCAAGACAATCAAATCATTTTCGGAGATCTAA 1569 0.4455 MAAAPAVTALNGLKVTQAYLEGKAVKETKVLMAELCRQFYTLGWVSGTGGSIAFKVHDDSIPKSQQLILMSPSGVQKERMEPEDMYVLSHNGSVLSAPSAKPYPHKPPKCSDSSPVFLKAYELRDAGAVIHSHGIESCLVTMINPLSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYEYELTDSLAKAIEAYPKSTAVLVRNHGVYVWGDTWISAKTQTECYHYLFDAAIKLHQMGLDWSAPNHGPIQSARSSLRIAGESNFSVKAKKDNGDTDPFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGRHLSLTYDTPDTQNDIKLLRSQVESDLEQGVPGAVPIPSDDAGKEEVIAALVANVDAMIKADRKITALKELQGHIWRTGYEKDELEGIVYDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGKTNHGDLRKYLSGFFDTTVGNKKETRSYVEISESLGVDKPSDILFVTDVYQEATAAKGAGLEAVISIRPGNGPLPENHGFKTIKSFSEI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1623 522 Gene3D - 390 522 IPR023214 -
Amo08g1623 522 SFLD enolase-phosphatase 281 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
Amo08g1623 522 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 281 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
Amo08g1623 522 SMART Aldolase_II_2 30 233 IPR001303 -
Amo08g1623 522 CDD HAD_EP 282 503 IPR023943 GO:0000287|GO:0019509|GO:0043874
Amo08g1623 522 SUPERFAMILY HAD-like 281 522 IPR036412 -
Amo08g1623 522 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 9 522 - -
Amo08g1623 522 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 32 237 IPR017714 GO:0005737|GO:0019509|GO:0046872
Amo08g1623 522 Pfam Class II Aldolase and Adducin N-terminal domain 32 232 IPR001303 -
Amo08g1623 522 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 9 522 IPR017714 GO:0005737|GO:0019509|GO:0046872
Amo08g1623 522 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 17 522 IPR027505 -
Amo08g1623 522 Gene3D - 294 389 - -
Amo08g1623 522 SUPERFAMILY AraD/HMP-PK domain-like 26 246 IPR036409 -
Amo08g1623 522 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 17 241 IPR027514 GO:0005737|GO:0019509|GO:0046872
Amo08g1623 522 Gene3D - 25 249 IPR036409 -
Amo08g1623 522 Hamap Enolase-phosphatase E1 [mtnC]. 279 522 IPR023943 GO:0000287|GO:0019509|GO:0043874
Amo08g1623 522 Pfam haloacid dehalogenase-like hydrolase 281 493 - -
Amo08g1623 522 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 281 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1623 Amo-Chr8 26694196 26701293 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1623 K16054 - gmx:100796209 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1617 18 31700530 31707639 Amo08g1623 08 26694196 26701293 hybridization