Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1305 ATGGGTAGCGCTTACAAAGCAGAGGAAGAGTACGACTACTTGTACAAGGTGGTGCTGATCGGAGACTCAGGYGTTGGGAAGTCGAACCTGTTGTCSAGGTTCACCAAGAACGAGTTCACCTTGGACTCAAAGTCCACCATTGGCGTCGAGTTCGCCACCCGAACCGTCCATGTTCACGACAAGATCGTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGATACCGGGCAATCACAAGTGCTTATTACCGAGGAGCTGTAGGTGCATTGGTTGTGTATGACATCAGCAGGCATGTGACCTTTGAGAAYGTGGAGAGATGGCTGAAGGAGCTTCGCGACCACACGGACGCCAACCTCGTTGTCATGCTGGTGGGGAACAAGGCGGATCTACGGCACCTGCGTGCCGTGCCAACGGAGGAAGCCAAGGAGTTTGCTGAGAGAGAGAAGATATACTTCATGGAAACMTCAGCACTTGAGTCTTTGAATGTGGACAGTGCCTTCACAGAAGTGCTAACTCAGATATACAATGTTGTGAGTAGGAAGAGCCTTGAGGCTGTGAATGACACTGMAGCATTGCCAAAGGGACAGACCATAAATCTTGGAASCAAAGAKGATGTCTCAGCTGTTAAGAAATCTGGTTGCTGCTCGGCATAG 657 0.4992 MGSAYKAEEEYDYLYKVVLIGDSGVGKSNLLSRFTKNEFTLDSKSTIGVEFATRTVHVHDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDISRHVTFENVERWLKELRDHTDANLVVMLVGNKADLRHLRAVPTEEAKEFAEREKIYFMETSALESLNVDSAFTEVLTQIYNVVSRKSLEAVNDTXALPKGQTINLGXKXDVSAVKKSGCCSA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1305 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 188 IPR027417 -
Amo08g1305 218 ProSiteProfiles small GTPase Rab1 family profile. 10 216 - -
Amo08g1305 218 Pfam Ras family 16 176 IPR001806 GO:0003924|GO:0005525
Amo08g1305 218 CDD Rab11_like 12 176 - -
Amo08g1305 218 PANTHER DRAB11-RELATED 4 215 - -
Amo08g1305 218 SMART ras_sub_4 12 178 - -
Amo08g1305 218 SMART ran_sub_2 20 217 - -
Amo08g1305 218 SMART rab_sub_5 15 178 - -
Amo08g1305 218 ProSiteProfiles small GTPase Rho family profile. 8 176 - -
Amo08g1305 218 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 4 215 - -
Amo08g1305 218 TIGRFAM small_GTP: small GTP-binding protein domain 13 171 IPR005225 GO:0005525
Amo08g1305 218 PRINTS Transforming protein P21 ras signature 15 36 - -
Amo08g1305 218 PRINTS Transforming protein P21 ras signature 153 175 - -
Amo08g1305 218 PRINTS Transforming protein P21 ras signature 38 54 - -
Amo08g1305 218 PRINTS Transforming protein P21 ras signature 56 78 - -
Amo08g1305 218 PRINTS Transforming protein P21 ras signature 118 131 - -
Amo08g1305 218 ProSiteProfiles small GTPase Ras family profile. 9 218 IPR001806 GO:0003924|GO:0005525
Amo08g1305 218 Gene3D - 7 216 IPR027417 -
Amo08g1305 218 SMART rho_sub_3 17 178 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1305 Amo-Chr8 21270327 21272295 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1305 K07904 - gmx:100781889 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0999 18 16269057 16271089 Amo08g1305 08 21270327 21272295 hybridization