Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1004 ATGGTGGTTTCCGATGCTRCCAACGGCGGTGGCTCTTCGTCTCCGCCACTGGTGGTGGAGCAAACCAACACGCTTGGGATCACGAAGCCTATCTCTCTCGCCGGTCCCACCGACGCCGATTTACATCGGAACGCCGAATTGGAGAAGTTTCTGCTTGATTCGGGACTCTACGAGAGCAATGAAGAAGCTGCTACCAGGAGAGAGGTTCTTCAGCGCCTTGATCAGACTGTTAAAAGRTGGGTGAAGCAGTTYACGCGTCAACGAGGCTATACGGATCAGATGGTTGAGGATGCCAATGCCGTTATTTTCACTTTCGGTTCTTATCGACTAGGGGTACATGGACCAGGAGCTGACATAGACACTTTGTGTGTTGGCCCTTCTTATGTGAATCGGGAGGAAGACTTCTTTATCATTCTGCATAACATCTTGGCTGAAATGGAAGAAGTTACTGAACTTCAACCAGTTCCAGATGCTCATGTCCCCGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTTTATGCAAGTATATCTCTTTTGGTTGTGCCTGAAGACCTGGACATCTCACATGGCTCAGTGCTGTATGATGTTGATGAACCTACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACCACACTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACGGGATTCCTTGGAGGCGTGAATTGGGCTCTATTAGTTGCTCGAATTTGCCAGCTTTACCCTAATGCAATCCCTAGTATGCTGGTTTCTCGATTCTTTAGGGTATATACACAYTGGAGGTGGCCAAATCCTGTCATGCTGTGCACAATAGAGGAYAATGAACTGGGTTTCCCAGTTTGGGATCCTCGTAGAAACCCGCGGGACAGATATCACATTATGCCAATTATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCCGCAAGCACTCTTCGTGTTATGAAGGAACAGTTTCGCTATGGCAACAAGATTTGTGATGAAATTGAGCTCAGTAAAGCCCAATGGAGTGCACTTTTTCAGCCATATTTCTTTTTCGAAGCCTACAAAAACTATTTACAAGTGGACATCCTTGCAGCAGACACTGATGACTTGTTAGCATGGAAAGGTTGGGTAGAATCTCGATTGAGGCAGCTCACCCTGAAGATAGAGCGGGATACAAATGGGATGTTGCAGTGTCATCCTTACCCACATGAGTATGCAGACACATCCAGACATTGTGCTCATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGAAAAAGGTCAAGAGGGACAACAATTTGATATACGTGGAACYGTTGATGAATTCAGGCAAGAAATAAATATGTATATGTACTGGAAGCCAGGGATGGAAATTTTTGTTTCCCATGTACGTCGAAAGCAGCTCCCTTTATTTGTATTTCCAGATGGTTACAAACGCAATCGGATGTCAAGGCACATAAGCCATTCAGCTGAAAAAATGGGTGAGGATGCCGCAAAGTCCAACCTAGGGTCTTCTGAAAGAAGTGTCAAGAGGAAAAATGACCATGAAATGTTGGATGAGAAGCTAGGCAAACCAGAGAAGAGGGCCTCTATCAGCCCYCAGAGGCTAGTGTGRGTCTCTCCAGAAAGTTGTTCATCTCAAATGAGTATTGATGGTACCAAAGGGGTTAGGTTAGCCAAGAATGCTGGCACCAAATGCGAAATTAAGTCATCTAATGGACTCCTAGAAAATGGAATAAGTACRGAAGGAGCTTACYTGCATKTTAGTGAAACAGGTGGTGTTCATCCCAAAAATGATAGTCAGAACTCAAGGTGTTCAGAAGTTCAGAATGAGAATGGAGTCYATAGGAACAAAGCTGGGGAAATGGATCTGGATTGCTTGGAAAGTGCAGAAACTGCATCTTSCAAAAGCTTGTCAAACTGTAAAGAGAGTGCTGTTGATATGGATCAACGACTAGACAATACTCATAATTTCCAAAGAACTGAATATTCAGATTATGTACCAACTGCGAGCTCCCAGGCCCTCAATTGCGAGCGAGATGTCAGACTTGGAAGTGTTGTATAA 2139 0.4399 MVVSDAXNGGGSSSPPLVVEQTNTLGITKPISLAGPTDADLHRNAELEKFLLDSGLYESNEEAATRREVLQRLDQTVKRWVKQFTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTHWRWPNPVMLCTIEDNELGFPVWDPRRNPRDRYHIMPIITPAYPCMNSSYNVSASTLRVMKEQFRYGNKICDEIELSKAQWSALFQPYFFFEAYKNYLQVDILAADTDDLLAWKGWVESRLRQLTLKIERDTNGMLQCHPYPHEYADTSRHCAHSAFFMGLQRKEGEKGQEGQQFDIRGTVDEFRQEINMYMYWKPGMEIFVSHVRRKQLPLFVFPDGYKRNRMSRHISHSAEKMGEDAAKSNLGSSERSVKRKNDHEMLDEKLGKPEKRASISPQRLVXVSPESCSSQMSIDGTKGVRLAKNAGTKCEIKSSNGLLENGISTEGAYLHXSETGGVHPKNDSQNSRCSEVQNENGVXRNKAGEMDLDCLESAETASXKSLSNCKESAVDMDQRLDNTHNFQRTEYSDYVPTASSQALNCERDVRLGSVV* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1004 712 Gene3D Poly(A) polymerase predicted RNA binding domain 373 488 - -
Amo08g1004 712 Pfam Nucleotidyltransferase domain 99 175 IPR002934 GO:0016779
Amo08g1004 712 Gene3D Beta Polymerase, domain 2 58 214 IPR043519 -
Amo08g1004 712 PANTHER NUCLEAR POLY(A) POLYMERASE 4 18 651 - -
Amo08g1004 712 MobiDBLite consensus disorder prediction 514 555 - -
Amo08g1004 712 Pfam Poly(A) polymerase predicted RNA binding domain 433 505 IPR007010 GO:0003723|GO:0043631
Amo08g1004 712 Pfam Poly(A) polymerase predicted RNA binding domain 373 433 IPR007010 GO:0003723|GO:0043631
Amo08g1004 712 SUPERFAMILY Nucleotidyltransferase 22 219 IPR043519 -
Amo08g1004 712 Pfam Poly(A) polymerase central domain 26 369 IPR007012 GO:0004652|GO:0043631
Amo08g1004 712 CDD NT_PAP_TUTase 66 220 - -
Amo08g1004 712 Gene3D - 26 368 - -
Amo08g1004 712 SUPERFAMILY PAP/OAS1 substrate-binding domain 221 370 - -
Amo08g1004 712 PANTHER POLY A POLYMERASE 18 651 - -
Amo08g1004 712 MobiDBLite consensus disorder prediction 611 630 - -
Amo08g1004 712 MobiDBLite consensus disorder prediction 530 553 - -
Amo08g1004 712 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 373 498 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1004 Amo-Chr8 17084571 17090402 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1004 K14376 - gmx:100802620 1122.84