Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0904 ATGGATTCTTCACAATCACAACAAGGGTCTAAGCTGGCTGGTTTGGTGGAGAATGCATCGATTCAGAGGGATGGATCTCGATTGGGTCATGGCGTCCCTATCTATGCTAAGGAGCTCATCGCCGGTGGCTTCGCCGGTGCGATTTCTAAGACCACCGTTGCACCCCTCGAACGGGTCAAGATTCTCTGGCAGACAAGGACAGCAGGATTTCATACTCTGGGTGTGTATCAATCATTGAAAAGGTTATCAAAGCATGAAGGATTTCTAGGACTATATAAAGGAAATGGAGCTAGCGTTATTCGGATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGATATAAAAGCTGGATCTTGAGCAATTATCCAATGTTAGGATCAGGTCCTATTGTTGATCTCTTAGCTGGTTCCGCGGCAGGAGGAACTTCAGTAATATGTACATATCCCTTAGATCTTGCCCGCACCAAACTCGCTTATCGGGTGGTAGAGAAAAAAGGCAGTTTCAAAGATGGTGTGAAAGGAGGTCATTCTCAAACTGGTCACAACAGCATTAAAAGTGTTCTTACAAGTGTCTACAGYGAAGGGGGAGTTCGTGGACTTTATAGAGGTGCAGGACCAACTATTACTGGAATACTTCCATATGCTGGTTTAAAGTTCTACACGTATGAGACATTGAAATTGCATGTTCCTGAAGAACATCAAAAGTCCATTTTGATGCGCCTCTCTTGRGGAGCCTTAGCTGGGTTATTTGGCCAGACCTTAACATACCCTTTAGATGTTGTTAAGAGACAAATGCAGGTTGGTAACTTGGAAAATGCAGCTCATGAAAATGCCAGATACCGAAATACATTCCATGGACTAAGAACAATTGTTCAAAACCAAGGGTGGAGACAGTTGTTTGCAGGTGTAAGCATCAACTATATAAGGATTGTTCCTTCAGCTGCAATAAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCCCAACAGAAGTCTCGATCAGTTTCCACTGGATGA 1035 0.4357 MDSSQSQQGSKLAGLVENASIQRDGSRLGHGVPIYAKELIAGGFAGAISKTTVAPLERVKILWQTRTAGFHTLGVYQSLKRLSKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILSNYPMLGSGPIVDLLAGSAAGGTSVICTYPLDLARTKLAYRVVEKKGSFKDGVKGGHSQTGHNSIKSVLTSVYSEGGVRGLYRGAGPTITGILPYAGLKFYTYETLKLHVPEEHQKSILMRLSXGALAGLFGQTLTYPLDVVKRQMQVGNLENAAHENARYRNTFHGLRTIVQNQGWRQLFAGVSINYIRIVPSAAISFTTYDMMKSWLGIPPQQKSRSVSTG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0904 344 Gene3D Mitochondrial carrier domain 34 331 IPR023395 -
Amo08g0904 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 119 IPR018108 -
Amo08g0904 344 Pfam Mitochondrial carrier protein 237 330 IPR018108 -
Amo08g0904 344 Pfam Mitochondrial carrier protein 35 122 IPR018108 -
Amo08g0904 344 Pfam Mitochondrial carrier protein 131 231 IPR018108 -
Amo08g0904 344 PANTHER SOLUTE CARRIER FAMILY 25 23 338 - -
Amo08g0904 344 PRINTS Mitochondrial carrier protein signature 94 114 IPR002067 GO:0055085
Amo08g0904 344 PRINTS Mitochondrial carrier protein signature 51 65 IPR002067 GO:0055085
Amo08g0904 344 PRINTS Mitochondrial carrier protein signature 144 162 IPR002067 GO:0055085
Amo08g0904 344 PRINTS Mitochondrial carrier protein signature 38 51 IPR002067 GO:0055085
Amo08g0904 344 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Amo08g0904 344 PRINTS Mitochondrial carrier protein signature 246 268 IPR002067 GO:0055085
Amo08g0904 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 230 IPR018108 -
Amo08g0904 344 SUPERFAMILY Mitochondrial carrier 36 325 IPR023395 -
Amo08g0904 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 237 329 IPR018108 -
Amo08g0904 344 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 23 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0904 Amo-Chr8 15682355 15685247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0904 111 339 Organic Solute Cotransporters AT1G14560 66.234 1.83e-109 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0904 - - gmx:100784421 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0904 08 15682355 15685247 Amo17g2908 17 131254240 131257421 hybridization