Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0893 ATGGGCCGTTCTCTCCTCTTTCTGCTCGCGGCCTTCTTCGCCGTCCTTGTCTCCGCCGTTCGAGACCCCATCGGAGAAGTTATCCGCCTTCCTTCCGAAGCTTCCAGATTCTTCAAAGCGCCTTCCGACGACGGCGACAACGTGGAGGAAGGAACTCGCTGGGCCATTTTAATCGCTGGTTCCAATGGCTACTGGAATTACAGACATCAGGCTGATGTTTGTCATGCGTATCAATTACTGAGGAAAGGTGGTCTCAAAGAAGAAAACATCATTGTGTTTATGTATGATGACATTGCTTTCAATGAAGAGAACCCACGGCCCGGAGTCATCATTAACAGTCCACATGGAGATGATGTTTACAAAGGAGTCCCAAAGGATTATGTTGGTGGAGATGTTACTGTAAACAACTTTTTTGCTGCTATACTTGGAAATAAGTCAGCTCTTACAGGTGGCAGTGGGAAGGTTGTAGATAGTGGTCCCAATGATCATATATTTATATACTATAGTGATCATGGGGGTCCTGGGGTGCTTGGGATGCCTACTAGTCCTTACTTATATGCATCTGATCTGATCGAAGTCTTGAAGAAGAAGCATGCTTCTGGAACATATAAAAGCATGGTATTTTATCTYGAGGCATGTGAATCTGGAAGTATCTTTGAAGGCCTTCTTCCAGAAGGTCTGAATATCTATGCAACAACAGCCGCAAACGCAGAAGAAAGCAGTTGGGGAACATATTGCCCTGGGGAGAATCCTAGTCCTCCACCAGAATTTGGAACCTGTCTAGGTGACCTATACAGTGTTGCTTGGATGGAAGACAGTGCCATACACAATTTACGTACAGAAACTTTGCACCAACAATACCAATTGGTTAAAGAAAGGACTTCCAACGGAAATTCAATGTATGGCTCTCATGTGATGCAATATGGTGATATAGGGATTAGCAGTAATAATCTCTTCCTATATTTGGGCACAAATCCAGCTAATGAAAATTTTACGGTTATGGATAACAACTCCTTGAAGCTACCGTCAAAGACAGCAGTAAACCAACGTGATGCAGATCTTGTCCATTTCTGGGATAAGTACCTCAAAGCTCCTGAGGGTTCTCCAAGGAAAGCTGCAGCAGAGAAACAAGTTATGGAAGCAATGTCTCACAGAATGCATATAGATAGCAGCGTCAAACTTATTGGAAAGCTCTTATTCGGCATTGAAAAAGGTCAAGAAATACTTAGCAGTGTTAGACCTTCTGGGGAGCCACTTGTTGATGACTGGGACTGCCTGAAATCACTGGTTACGACTTTTGAGACGCATTGCGGATCGTTGTCTCAGTATGGAATGAAACACATGAGATCCTTTGCAAACTTCTGCAATGCAGGCATAAGGAGGGAGCAATTGGCTGATGCCTCAGCACATGCATGCACAAGTGTTCCATCCAATCCATGGAGTTCACTACACAGGGGTTTCAGTGCATAG 1470 0.4429 MGRSLLFLLAAFFAVLVSAVRDPIGEVIRLPSEASRFFKAPSDDGDNVEEGTRWAILIAGSNGYWNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAFNEENPRPGVIINSPHGDDVYKGVPKDYVGGDVTVNNFFAAILGNKSALTGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTSPYLYASDLIEVLKKKHASGTYKSMVFYLEACESGSIFEGLLPEGLNIYATTAANAEESSWGTYCPGENPSPPPEFGTCLGDLYSVAWMEDSAIHNLRTETLHQQYQLVKERTSNGNSMYGSHVMQYGDIGISSNNLFLYLGTNPANENFTVMDNNSLKLPSKTAVNQRDADLVHFWDKYLKAPEGSPRKAAAEKQVMEAMSHRMHIDSSVKLIGKLLFGIEKGQEILSSVRPSGEPLVDDWDCLKSLVTTFETHCGSLSQYGMKHMRSFANFCNAGIRREQLADASAHACTSVPSNPWSSLHRGFSA* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0893 489 PIRSF AE 2 489 IPR043577 GO:0004197|GO:0051603
Amo08g0893 489 PRINTS Hemoglobinase (C13) cysteine protease signature 54 78 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 PRINTS Hemoglobinase (C13) cysteine protease signature 79 108 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 PRINTS Hemoglobinase (C13) cysteine protease signature 126 141 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 PRINTS Hemoglobinase (C13) cysteine protease signature 154 173 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 PRINTS Hemoglobinase (C13) cysteine protease signature 203 219 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 Pfam Peptidase C13 family 53 323 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 Gene3D - 51 347 - -
Amo08g0893 489 PIRSF Legumain 1 489 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 PANTHER HEMOGLOBINASE FAMILY MEMBER 5 488 IPR001096 GO:0006508|GO:0008233
Amo08g0893 489 PANTHER VACUOLAR-PROCESSING ENZYME 5 488 - -
Amo08g0893 489 Gene3D - 349 478 IPR046427 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0893 Amo-Chr8 15260944 15265648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0893 K01369 - gmx:100791675 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0893 08 15260944 15265648 Amo17g2937 17 131577636 131582863 hybridization