Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0870 ATGGCACCTTTGTTCAGCTGGGGTGCGAAAGAGAGCCACCGTGGAACACCGGTGGTGGTGAAGATGGAGAACCCAAACTGGTCCATGGTGGAGCTCGAGGGTCCTTCCGACGAAGACTTGATCATTGGTGGTGGTGGTGAACATTCGAGTCGCGCAGGGGAAAAAAGAAGAGGCAAAAACGCAAAGCAACTCACCTGGGTTCTTCTCCTTAAAGCACATAAAGCCGCCGGTTGTTTAGCCTCCGTAGCACCGGCATTGTACGTCCTGGCCTCCGCCGTGAAGCGCCGCGTGGCCTCCGGAAGAACAGACGAGGACGCAGACTCCGGCGGCAGGGAGAACGAGAACCCAACGGTGAAGAGCAGATTCTACTCTTTCATCAAGGTTTTTCTGTGGCTTTCGGTGGCACTCTTGTGTTTTGAAATTGCTGCGTATTTGAAAGGGTGGCATTTGGGTTCTCCAAGTCTTCAGTTGGAATTTTATTTGCTTTGGTCACCTTCTTTTGGAGTGAAGGATTTCTTCGATTGGCTTTATTCTCGGTGGGTTTTGGTTCGTGTGGAGTACCTTGCTCCACCTCTTCAGTTTCTCGCCAATGTGTGTATTATTCTCTTTATCATTCAGAGTTTCGATAGGCTTCTTCTCTGCTTGGGTTGTTTCTGGATCCGATTTAAGAAGATCAAACCCATCCCCAAAGATGCACCTCTGGATCTTGAATCTGGAGAGAAAGGTTACTTCCCCATGGTGCTTGTTCAGATCCCCATGTGCAATGAGAAAGAGGTTTACCAGCAATCTATTGCGGCCGTGTGCAATTTGGATTGGCCAAAGTCCAAGTTGTTGATTCAGGTGCTTGATGATTCTGATGACCCAACAACGCAGTTGCTGATCAAGGAGGAGGTGCAAAAATGGCAACATGAGGGTGCCAACATTTTCTACCGCCATCGCGTCATTAGGGATGGTTACAAGGCTGGGAACCTGAAATCCGCCATGAATTGTAGCTATGTCAAGGACTATGAGTTCGTTGCAATCTTTGATGCTGACTTTCAACCCACACCAGATTTCCTTAAGAGAACAGTTCCTCATTTTAAGGATAATGAGGAACTAGGACTTGTTCAAGCAAGATGGTCTTTTGTGAATAAGGATGAGAACCTGTTAACCAGGTTGCAGAACATTAACCTATCATTCCATTTCGAGGTGGAGCAACAAGTCAATGGCATTTTCATTAATTTCTTTGGCTTCAATGGCACTGCTGGGGTGTGGAGAATCAAGGCCTTGAATGATGCTGGTGGTTGGTTGGAGAGAACCACTGTTGAGGACATGGACATTGCTGTTAGAGCTTATCTCCATGGCTGGAAATTCATCTTCCTCAATGATGTTGAGTGCCAGTGCGAGTTACCAGAATCTTATGAAGCTTATAGGAAACAACAACATAGATGGCATTCTGGGCCAATGCAATTGTTCCGCCTTTGTTTGCCTGACATCATACGGGCCAAGATAAGCATATGGAAGAAATTCAATATGATATTCCTTCTTTCTTCTTAG 1536 0.4655 MAPLFSWGAKESHRGTPVVVKMENPNWSMVELEGPSDEDLIIGGGGEHSSRAGEKRRGKNAKQLTWVLLLKAHKAAGCLASVAPALYVLASAVKRRVASGRTDEDADSGGRENENPTVKSRFYSFIKVFLWLSVALLCFEIAAYLKGWHLGSPSLQLEFYLLWSPSFGVKDFFDWLYSRWVLVRVEYLAPPLQFLANVCIILFIIQSFDRLLLCLGCFWIRFKKIKPIPKDAPLDLESGEKGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKLLIQVLDDSDDPTTQLLIKEEVQKWQHEGANIFYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLSFHFEVEQQVNGIFINFFGFNGTAGVWRIKALNDAGGWLERTTVEDMDIAVRAYLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKISIWKKFNMIFLLSS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0870 511 SUPERFAMILY Nucleotide-diphospho-sugar transferases 247 508 IPR029044 -
Amo08g0870 511 PANTHER - 5 509 - -
Amo08g0870 511 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 5 509 - -
Amo08g0870 511 Pfam Glycosyl transferase family group 2 339 482 IPR001173 -
Amo08g0870 511 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 237 462 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0870 Amo-Chr8 14929941 14933170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0870 1 501 Miscellaneous Gene Families AT4G07960 74.609 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0870 - - csv:101204215 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0870 08 14929941 14933170 Amo17g2950 17 131803818 131807625 hybridization