Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0836 ATGTTGTGCGCTTGCTCCGGGGAGCAATTCAAATTGGAGGAGGCGCCGCCACAGTCCCCGGATTCTCTGGCGACAAGGGATTTCTCAGCCGGTGGACTTTCTTCCAGGACTGCGGATTGGGAACCCAAAATCGATGATACCCAAGTTGACGAAGTAGAGTCCACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAAGCCAGGGCTTTGCTGGGGAGGCTTGAGTATCAAAGAGGGAACTTTGATGCTGCTCTTCAAGTATTTCAAGGCATAGACATCAAGGGTTTGACCCCTAGGATGGTCAGAGCCATAGCTGAAAGAACCAGGCAAAGGAAACCACGTTCCAAGGCAGACATTGTGGTTGCCAATGTGATGTCATTGCATTCAGTAAGCCTCCTTCTTGAGGCAATTTTGCTTAAAGCAAAATCATTAGAGGAACTTGGCCGATATATCGAGGCTGCAAAGGAGTGCAGAATAATTGTGGATACAGTTGAATCTGCACTTCCTAAGGGAATGCCTGAGGGTATTGGTGAAGATTGCAAGTTGCAAGAAATGTTCCACAGAGCATTAGAGTTGCTTCCAAACTTATGGATCAAGGCAGGATTTTTAGATGAAGCTGTTACTGCATATCGTCGTGCTCTAATCAAGCCTTGGAATTTGGAGCATCAGAGATTGGCTGCTGTGCAAAAAGACTTAGCTAAGACCCTACTCTACAGTGGTGTTGAAGTAAGTCTACCCTCTCAGTTGCAAGTGTGGGGTCCAACAACACCCAAGAGTAACATCGAAGAAGCAATACTTTTGCTGTTAATACTCATGAGCAAGGTGGGAATTCAGGAAATTGACTGGGATGCTGAAATAATGGATCACCTTACTTTTGCTCTTTCCGTTACTGGAATGTGTGAGTCATTGACAGTTCACATAGAGCAGATCCTCCCAGGGATCTATAGTCGAGCTGAGAGGTGGTACCTTCTTGCTCTGTGTTATAGTGCAGCAGGACAGAATGAAGTAGCATTGAACCTTTTGAAGAAGGCTTGTGGTAGTTCTGAAGCAAAGCAAAGACCTCACTTCCCTTCATTTTTGTTTGGAGCAAAACTGTGTTCACAAGATCCTAGCCATGCTCATGAAGGCATTAACTTTTCGCACGAGGTTATTGATCTAGCCAAGCATCGAAATGAGCATTTCTTGGATCAAGGCTATAAATTTCTAGGCATGTGCTATGGGGCTGCAGCTAGAATTTCTGTGTTGGATTCTGAAAGAAGTATATTTCAAGGAGAGTCTCTGAAATTTTTAAATCGTGCTGTGGAGAATGGAAATGGTGGCCCGGAAGCTATATTCAGCCTTGGACTAGAAAATGCGAAGCAAAGGAATCTGGATGTGGCTTTTGACAACATGATGATGTACTCAGACATGACAGTTGGCAGCTCAGGGAGAGGTTGGCAGCTGTTAGCACTTATAGTATCCGCACAGCAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTGGATGAGGCTGGGAGGATGGATCAGCTAGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGAAACCGAAACAAGCAGTAGAGACCTACAGAATCTTGCTGGCATTAATTCATGGAAAAAAGGAGCATTGGCATGAAGATAAGAAACTTGGTCAAGCAATAGGATTCAGGCATGAGGCAATAAAAGAGAAGAATTTGGAAACAGAAGCCTGGCAGGATTTGGCTACTATTTATGCAGATATCGGTTCATTGATTGATGCAAAGTCTTGTATTGACAAAGCTCAATTAATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACTGGGAGGTTGTTGGAAGCTCAATCATTATACAAGGAAGCTTTTGTTTCTTTCTCGATCTCATTATCAATCGAGCCAGATTACATTCCCAGTATTGTTTCAACTGCAGAATTGTTTCTGAAACTTGGTATGCAGTCACTTCCAATTGTAAGAAGCTTTTTAATGAATGCTTTGCGATTGGATCCCACAAACCATGATGCATGGTTCAACCTTGGATTAGTTTCAAAAAACGAAGGTTCCTTGCAGCAAGCAGCAGATTTCTTTCAAGCTGCATATGAACTGAAGCTTTCGGCTCCGATCCAAAAGTTCGAGTAA 2151 0.43 MLCACSGEQFKLEEAPPQSPDSLATRDFSAGGLSSRTADWEPKIDDTQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMVRAIAERTRQRKPRSKADIVVANVMSLHSVSLLLEAILLKAKSLEELGRYIEAAKECRIIVDTVESALPKGMPEGIGEDCKLQEMFHRALELLPNLWIKAGFLDEAVTAYRRALIKPWNLEHQRLAAVQKDLAKTLLYSGVEVSLPSQLQVWGPTTPKSNIEEAILLLLILMSKVGIQEIDWDAEIMDHLTFALSVTGMCESLTVHIEQILPGIYSRAERWYLLALCYSAAGQNEVALNLLKKACGSSEAKQRPHFPSFLFGAKLCSQDPSHAHEGINFSHEVIDLAKHRNEHFLDQGYKFLGMCYGAAARISVLDSERSIFQGESLKFLNRAVENGNGGPEAIFSLGLENAKQRNLDVAFDNMMMYSDMTVGSSGRGWQLLALIVSAQQRFKDAETIVDFALDEAGRMDQLELLRLKAVLQIAQQKPKQAVETYRILLALIHGKKEHWHEDKKLGQAIGFRHEAIKEKNLETEAWQDLATIYADIGSLIDAKSCIDKAQLIEFFSPRSWHITGRLLEAQSLYKEAFVSFSISLSIEPDYIPSIVSTAELFLKLGMQSLPIVRSFLMNALRLDPTNHDAWFNLGLVSKNEGSLQQAADFFQAAYELKLSAPIQKFE* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0836 716 Coils Coil 57 77 - -
Amo08g0836 716 Gene3D Tetratricopeptide repeat domain 663 712 IPR011990 GO:0005515
Amo08g0836 716 SUPERFAMILY TPR-like 195 600 IPR011990 GO:0005515
Amo08g0836 716 MobiDBLite consensus disorder prediction 13 37 - -
Amo08g0836 716 PANTHER PROTEIN NPGR1 1 715 - -
Amo08g0836 716 Pfam Tetratricopeptide repeat 318 348 IPR019734 GO:0005515
Amo08g0836 716 Gene3D Tetratricopeptide repeat domain 283 548 IPR011990 GO:0005515
Amo08g0836 716 Gene3D Tetratricopeptide repeat domain 37 269 IPR011990 GO:0005515
Amo08g0836 716 SUPERFAMILY TPR-like 550 707 IPR011990 GO:0005515
Amo08g0836 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Amo08g0836 716 SMART tpr_5 512 545 IPR019734 GO:0005515
Amo08g0836 716 SMART tpr_5 318 351 IPR019734 GO:0005515
Amo08g0836 716 SMART tpr_5 573 606 IPR019734 GO:0005515
Amo08g0836 716 SMART tpr_5 476 509 IPR019734 GO:0005515
Amo08g0836 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Amo08g0836 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Amo08g0836 716 Gene3D Tetratricopeptide repeat domain 549 658 IPR011990 GO:0005515
Amo08g0836 716 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Amo08g0836 716 Pfam Tetratricopeptide repeat 669 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0836 Amo-Chr8 14536540 14540494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0836 1 715 Calmodulin-binding Proteins AT1G27460 58.832 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0836 K21843 - gmx:100799251 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0836 08 14536540 14540494 Amo17g2402 17 119957541 119960638 hybridization