Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0662 ATGGAAGTGCCGGAGTGCCCGGTGTGCCTCGAACGCTACGACAACCAAGTTTCCATCCCTAGGGTCCTATCTTGCGGTCACTCCGTCTGCGAAGCATGCCTCGTGGAGCTTCCGCTGCGGTTCCCGAACACGATTCGGTGCCCGGCGTGTACACAGCTCGTTAAGTACTCTTCAGAGCAAGGACCTTCGTCTCTTCCAAAGAACATCGACCTTCTCAGGCTTTGCCTCTCTTCATCATCTTCTTCTTCTTCGCGATCGGTGAAACCGACTCAACGGTCAACGATCGACGGTTGTGATGATCGGTCTGTAATTCGAGATCGGTTCTGGTCCGACGAGTTCTATGCCAAGTGGAAGGACTGGATTCTCCCGCACGACGCAGTTTCGGTGGAGTCCCGACCTGAACCCGAATCCGAACCCAGCGGGTTTGTGTTGCGAGGGCAATTTGGTTCGAGTTCTTCGTTGAAGGGTAGGGTTAGTGTTTGTTCTCGAAATAGCAAGTGTTTGAGCCTTGTTCCTGTTTTTTCTTTACCTCGTGTTTTGAATTGTTCGAAGTTTAAGTTCAGTTATGCTGCGAGGATTATGGAATGTTTGGTGGGGATGAAGGAGGCTGTGAGGGAGGAGTTAGCTTTGATTCTAGAAGCTTCTGTGAGGCAGGGCAGGGTTTTTAGGGTTTATGGGTTGTGGAGTGAAGTGGAGGTAGTGGATGGGTCATTGTACCTGGTGTGTGAGAGGCACAATGGTGGTAGCATTTTGCAGAAGTTTGGTGAATTGAAGAATGGGTTCCTTGGTTTGGGATTGGAAGATAAAAAAGATGGGATTTTAAGCTTTGCTGTGATTGGGAAGAGTGTGTGTGATTCTATGCTGGCTTTGCATTTGGAAGGTTTGGCTGCTGGTTGTTTAGGACCTTCGTGCTTTGCTTTCGATGAGCTTGGTGGTGTTTGTGTTGATTTGAATGAGGTTTTGGTTATGAGAAGGAAGACTGTGTATAGTTTTTCTGGTGGCAACAAGGTTAGGCAGAAAGACGAGGGATTGTTTAAGGGTTGTTTAAAAAATGAGCTTTTTTTATGCCCTGAGGTTTTGTTTCGATTACTGCAGAAGGATGCTGCTGTTAATCCGGAGGATGAGCATTCCAGATATCCGTTCGGGTATGGCTCAGATGTGTGGTCATTGGCTTGTGTGCTGTTGTGGCTTCTCATTGGAGATGCACTCCCTCAGATTCCCTTTGAAATGAGTGAAGAGAATGGCTTTGACTTATCAGCTAGTTATGTTTGTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTTGGCTCTGAATATCCGTCATTGAGGGGGACACTTTGCAAATGTTTGGACATGAATCCGGGAAACCGCATGAGTGTGGTGGATGTGCGGAAGTGCATTCAGGATATGTTACTCAAACCTGAATTCGATTTTCTGGAAAACTTGGAGGTCATGGTTAATCGGAGCAGCACTGGTTGCTGCTTGGTTCTTGATGAGTTGAATGAAAAAGAAGACAATGGGCCACCAGATGTTGTTGATGGGGAAGAGAAACCCGATGCAGATTTGGTTGCTAGCTTATCTAAGGGAATGGCTGAACTTAAAGATCTGCGAGGACATCTGGATTGTATCTCTGGATTAGCAATTGGCGGGGGATATCTGTTTAGCTCTTCGTTTGATAAAACTGTCAAAGTATGGTCGTTGCTGGACTTTTCTGTTTCACACACGTTTAAAGGTCATGAGGATAAAGTCATGGCTATAGTTTATGTAGATGATAAAGAACCATTGTGTGTAAGTGGTGATAATGGAGGGGGCATATTTGTCTGGGGACTTTCTGCTCCTCTCAGGCAAGACCCCTTAAGGAAATGGTATGAGCAGAAGGATTGGCGCTTCAGTGGTATCCATTCGTTAACTGTTTCAGCAAGTCGTTGTCTCTACACCGGAAGTGGAGATAGAACAATAAAAGGTTGGTTGTTAAAGGATGGAACTTTGATGTGCACAATGACTGGTCATAGGTCTGTAGTTTCCACTCTTGTAGTGTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATTCGGTTGTGGAGTCTTAGCGATCACAGCCCATTGACAGTGCTAGGGGAAGGTATGCCTGGAGAAATGAAGTCTATCCTAGCTATTACTGTTGATAGACATTTGCTTGTTGCGGCGTATGAGAACGGCTGCATAAAGGTATGGAGAAATGATGTGTTCATGAGTTCCAAATCATTACATAATGGTGCCATTTTTGCTATGAGCATGCAAGGGCAATGCCTTTATACAGGTGGCTGGGACAAAAATATAAATATACAGGAATTAGCTGGAGACGACGAATTGGAAGTCAGAGCATTCGGTACCATTTCTTGCAGTTCTGTTGTAACGGCTATTTTAAGCTGTCAAGGAAAACTTTTTGTTGGATATGCTGACAAGTCTATCAAGGTTTATCGTGGTAAATGGTAA 2487 0.4524 MEVPECPVCLERYDNQVSIPRVLSCGHSVCEACLVELPLRFPNTIRCPACTQLVKYSSEQGPSSLPKNIDLLRLCLSSSSSSSSRSVKPTQRSTIDGCDDRSVIRDRFWSDEFYAKWKDWILPHDAVSVESRPEPESEPSGFVLRGQFGSSSSLKGRVSVCSRNSKCLSLVPVFSLPRVLNCSKFKFSYAARIMECLVGMKEAVREELALILEASVRQGRVFRVYGLWSEVEVVDGSLYLVCERHNGGSILQKFGELKNGFLGLGLEDKKDGILSFAVIGKSVCDSMLALHLEGLAAGCLGPSCFAFDELGGVCVDLNEVLVMRRKTVYSFSGGNKVRQKDEGLFKGCLKNELFLCPEVLFRLLQKDAAVNPEDEHSRYPFGYGSDVWSLACVLLWLLIGDALPQIPFEMSEENGFDLSASYVCWVEKVSSVLEDKLGSEYPSLRGTLCKCLDMNPGNRMSVVDVRKCIQDMLLKPEFDFLENLEVMVNRSSTGCCLVLDELNEKEDNGPPDVVDGEEKPDADLVASLSKGMAELKDLRGHLDCISGLAIGGGYLFSSSFDKTVKVWSLLDFSVSHTFKGHEDKVMAIVYVDDKEPLCVSGDNGGGIFVWGLSAPLRQDPLRKWYEQKDWRFSGIHSLTVSASRCLYTGSGDRTIKGWLLKDGTLMCTMTGHRSVVSTLVVCDEVLYSGSWDGTIRLWSLSDHSPLTVLGEGMPGEMKSILAITVDRHLLVAAYENGCIKVWRNDVFMSSKSLHNGAIFAMSMQGQCLYTGGWDKNINIQELAGDDELEVRAFGTISCSSVVTAILSCQGKLFVGYADKSIKVYRGKW* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0662 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Amo08g0662 828 SMART serkin_6 142 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0662 828 SMART ring_2 6 50 IPR001841 -
Amo08g0662 828 SUPERFAMILY Protein kinase-like (PK-like) 217 477 IPR011009 -
Amo08g0662 828 Gene3D Transferase(Phosphotransferase) domain 1 200 473 - -
Amo08g0662 828 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 824 - -
Amo08g0662 828 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Amo08g0662 828 Gene3D - 512 615 IPR015943 GO:0005515
Amo08g0662 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 669 701 - -
Amo08g0662 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 708 IPR001680 GO:0005515
Amo08g0662 828 ProSiteProfiles Protein kinase domain profile. 137 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0662 828 Pfam WD domain, G-beta repeat 665 699 IPR001680 GO:0005515
Amo08g0662 828 Pfam WD domain, G-beta repeat 535 568 IPR001680 GO:0005515
Amo08g0662 828 Gene3D - 618 827 IPR015943 GO:0005515
Amo08g0662 828 SUPERFAMILY RING/U-box 5 58 - -
Amo08g0662 828 SUPERFAMILY WD40 repeat-like 533 825 IPR036322 GO:0005515
Amo08g0662 828 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Amo08g0662 828 PANTHER - 2 824 IPR044715 -
Amo08g0662 828 SMART WD40_4 744 781 IPR001680 GO:0005515
Amo08g0662 828 SMART WD40_4 702 743 IPR001680 GO:0005515
Amo08g0662 828 SMART WD40_4 662 699 IPR001680 GO:0005515
Amo08g0662 828 SMART WD40_4 531 568 IPR001680 GO:0005515
Amo08g0662 828 SMART WD40_4 571 611 IPR001680 GO:0005515
Amo08g0662 828 SMART WD40_4 617 659 IPR001680 GO:0005515
Amo08g0662 828 SMART WD40_4 789 825 IPR001680 GO:0005515
Amo08g0662 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 577 IPR001680 GO:0005515
Amo08g0662 828 CDD RING-HC_TRIM32_C-VII 5 51 - -
Amo08g0662 828 Pfam zinc-RING finger domain 5 52 IPR001841 -
Amo08g0662 828 PRINTS G protein beta WD-40 repeat signature 646 660 IPR020472 -
Amo08g0662 828 PRINTS G protein beta WD-40 repeat signature 686 700 IPR020472 -
Amo08g0662 828 PRINTS G protein beta WD-40 repeat signature 555 569 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0662 Amo-Chr8 11761052 11765042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0662 553 795 Acyl Lipid Metabolism Gene Families AT3G18860 28.125 2.06e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0662 - K03070 lja:Lj1g3v0874380.1 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0662 08 11761052 11765042 Amo17g2699 17 127403895 127407709 hybridization