Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0648 ATGATGTTGAAGCCATCGTCGTGCTTCTACTACTCCTCTCTTCTCCTCCTTCTAACGGCGGCAGCGTTCGTCATCGTCCTCGCCACCGTCACCTACGACGGCAGATCCTTAATCATTGATGGCCAACATAGAATCTTATTCTCCGGTTCTATTCACTATCCTCGCAGCACTCCTGAGATGTGGCCTGATTTAATCACAAAAGCTAAAGAAGGAGGGTTAGATGTCATACAAACTTACGTCTTTTGGAACCTTCATGAGCCTCAACAAGGACAGTACAACTTTAGTGGAAGACGTGATTTAGTGAGATTCATTAAGGAAATTCAAGCACAAGGCTTATATGTAACCCTTCGAATTGGACCCTACATTGAGAGTGAATGGACTTATGGGGGTCTACCATTGTGGTTACATGACATTCCGGGTATTACTTTTAGAACTGATAACAATCAATATAAGTTTCACATGCAAAGGTTCGCTGCCAAAATAGTCAACCTGATGAAATCAGCCAATCTTTATGCTTCTCAAGGAGGGCCTATAATACTTTCTCAGATTGAAAATGAATATGGAAATGTTGAAAAGGCTTATCATGAGCAAGGAACCTCCTATATTCGTTGGGCTGCTCAAATGGCCGTTGGACTCAATACTGGGGTGCCTTGGGTTATGTGCAAGCAAGATGATGCCCCTGATCCAATGATAAATGCTTGCAATGGCATGAAGTGTGGGACAACATTTAAGGGTCCAAACTCTCCTAACAAGCCTTCTATATGGACAGAGAATTGGACTAGTTTTTATCAAGCCTTTGGAGAAAAGCCATATCTAAGATCAGCAGAAGACATTGCATATAATGTTGCTCTGTTCATTGCTAAGAAAGGAAGCTATGTCAATTACTACATGTACCATGGAGGAACCAATTTTGACAGAACGGCATCTGCTTATATAATAACGGCTTATTATGATGAAGCTCCATTGGATGAATATGGATTGGTTAGGCAACCAAAATGGGGTCATCTAAAGGAGCTACATGCTGCAATCAAGTCATGTTCAGACACTTTACTAAATGGAACTCAAAGCATAATCACTTTGGGTTCCCAGCAACAAGCTTATGTTTTCAGAAGGAGCTCAAAGGAATGTGCTGCCTTCCTGGAAAATAGTGGTGGAAAGGAATCCACAGTCAAATTTCAGAACATTCCATATGTATTGCCCCCAAGATCAATCAGCATTCTACCAGATTGCAAGAAAGTAACCTTCAATTCAGGCAAGGTAAGCACACAAAACAATGCCAGAGTGAGAGCAATGATACCACAGTTAAAGTTCAATACAGCTGAAAGATGGAAAGTATATACAGAAGCCATCCCTAACTTTGATGATACAAAATTAAGAGCAAATAAACTATTAGACCAAATCAGCACAGTAAAAGATACATCTGATTACTTGTGGTACACTTTTAGGTTTAATGACAAAGCTCCTATTGTTCAATCCTTGCTTAGAGTATTAAGTCAAGGGCATGTTTTGCATGCATTCATCAATGGAGTTTTAGTAGGCTCTGCACATGGGACACATGACAGTAGATCTTTTGTCACAGAATGCAAAGTAAATCTGACAAATGGGATGAACGTCTCCTTACTAAGTGCAACTGTTGGAATGCCTGCTTCAGGAGCATATCTAGAGAGCAAAGTTGCTGGTTTGCGTTCGGTAAAAGTTCAAGGCAGAGATTTCACTAATCAAGCATGGGGATATCAGGTTGGCCTGCAAGGAGAGAAACTGCAAATCTATACAGATATTGGATTAAGTAAAGTTCAGTGGGGAAGTTTTCAAAGTTCTGTGAAACCACTCACATGGTACCAGACTACATTTGATGCACCAGCAGGCAAAGATCCTGTAGTGCTTAACCTTGGTTCTATGGGAAAGGGAGAAGCTTGGGTTAATGGCCAAGGTATTGGTCGATATTGGTTATCTTTTCACACAGAAAACGGGGATCCTTCACAAACATGGTATCATATACCACGATCCCTCCTAAAATCTACTGGGAATCTACTAGTTCTATTTGAAGAAGAAACTGGGAACCCACTAGAAATTACTCTAGACACAGTTATATATAAGTGA 2100 0.4067 MMLKPSSCFYYSSLLLLLTAAAFVIVLATVTYDGRSLIIDGQHRILFSGSIHYPRSTPEMWPDLITKAKEGGLDVIQTYVFWNLHEPQQGQYNFSGRRDLVRFIKEIQAQGLYVTLRIGPYIESEWTYGGLPLWLHDIPGITFRTDNNQYKFHMQRFAAKIVNLMKSANLYASQGGPIILSQIENEYGNVEKAYHEQGTSYIRWAAQMAVGLNTGVPWVMCKQDDAPDPMINACNGMKCGTTFKGPNSPNKPSIWTENWTSFYQAFGEKPYLRSAEDIAYNVALFIAKKGSYVNYYMYHGGTNFDRTASAYIITAYYDEAPLDEYGLVRQPKWGHLKELHAAIKSCSDTLLNGTQSIITLGSQQQAYVFRRSSKECAAFLENSGGKESTVKFQNIPYVLPPRSISILPDCKKVTFNSGKVSTQNNARVRAMIPQLKFNTAERWKVYTEAIPNFDDTKLRANKLLDQISTVKDTSDYLWYTFRFNDKAPIVQSLLRVLSQGHVLHAFINGVLVGSAHGTHDSRSFVTECKVNLTNGMNVSLLSATVGMPASGAYLESKVAGLRSVKVQGRDFTNQAWGYQVGLQGEKLQIYTDIGLSKVQWGSFQSSVKPLTWYQTTFDAPAGKDPVVLNLGSMGKGEAWVNGQGIGRYWLSFHTENGDPSQTWYHIPRSLLKSTGNLLVLFEEETGNPLEITLDTVIYK* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0648 699 Pfam Glycosyl hydrolases family 35 36 342 IPR031330 -
Amo08g0648 699 Gene3D - 565 697 - -
Amo08g0648 699 Pfam Beta-sandwich domain in beta galactosidase 350 420 IPR041392 -
Amo08g0648 699 SUPERFAMILY Galactose-binding domain-like 575 696 IPR008979 -
Amo08g0648 699 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Amo08g0648 699 Gene3D Glycosidases 25 347 - -
Amo08g0648 699 SUPERFAMILY Galactose-binding domain-like 404 555 IPR008979 -
Amo08g0648 699 PANTHER BETA-GALACTOSIDASE RELATED 14 696 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 635 651 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 291 306 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 254 269 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PRINTS Glycosyl hydrolase family 35 signature 608 622 IPR001944 GO:0004553|GO:0005975
Amo08g0648 699 PANTHER BETA-GALACTOSIDASE 14 696 - -
Amo08g0648 699 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0648 Amo-Chr8 11577937 11586742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0648 14 696 Glycoside Hydrolase AT5G63800 59.169 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0648 - - gmx:100789220 1129.01