Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0609 ATGATGTTGAACCTATCGTCGTGCTTCTTCTACTCCTCTCTTCTCCTCCTTCTAACGGCGGCAGCGTTTGTCACCGTCCTCGCCACCGTCACCTATGACGGCAGATCCTTAATCATTGATGGCCAACATAGAATCTTATTCTCCGGTTCTATTCACTATCCTCGCAGCACTCCTGAGATGTGGCCTGATTTAATCACAAAAGCTAAAGAAGGAGGGTTAGATGTCATACAAACTTACGTCTTTTGGAACCTTCATGAGCCTCAACAAGGACAGTACAACTTTAGTGGAAGACGTGATTTAGTGAGATTCATTAAGGAAATTCAAGCACAAGGCTTATATGTAACCCTTCGAATTGGACCCTACATTGAGAGTGAATGGACTTATGGGGGTCTACCATTGTGGTTACATGACATTCCGGGTATTACTTTTAGAACTGATAACAATCAATATAAGTTTCACATGCAAAGGTTCGCTGCCAAAATAGTCAACCTGATGAAATCAGCCAATCTTTATGCTTCTCAAGGAGGGCCTATAATACTTTCTCAGATTGAAAATGAATATGGAAATGTTGAAAAGGCTTATCATGAGCAAGGAACCTCCTATATTCGTTGGGCTGCTCAAATGGCCGTTGGACTCAATACTGGGGTGCCTTGGGTTATGTGCAAGCAAGATGATGCCCCTGATCCAATGATAAATGCTTGCAATGGCATGAAGTGTGGGACAACATTTAAGGGTCCAAACTCTCCTAACAAGCCTTCTATATGGACAGAGAATTGGACTAGTTTTTATCAAGCCTTTGGAGAAAAGCCATATCTAAGATCAGCAGAAGACATTGCATATAATGTTGCTCTGTTCATTGCTAAGAAAGGAAGCTATGTCAATTACTACATGTACCATGGAGGAACCAATTTTGACAGAACGGCATCTGCTTATATAATAACGGCTTATTATGATGAAGCTCCATTGGATGAATATGGATTGGTTAGGCAACCAAAATGGGGTCATCTAAAGGAGCTACATGCTGCAATCAAGTCATGTTCAGACACTTTACTAAATGGAACTCAAAGCATAATCACTTTGGGTTCCCAGCAACAAGCTTATGTTTTCAGAAGGAGCTCAAAGGAATGTGCTGCCTTCCTGGAAAATAGTGGTGGAAAGGAATCCACAGTCAAATTTCAGAACATTCCATATGTATTGCCCCCAAGATCAATCAGCATTCTACCAGATTGCAAGAAAGTAACCTTCAATTCAGGCAAGGTAAGCACACAAAACAATGCCAGAGTGAGAGCAATGATACCACAGTTAAAGTTCAATACAGCTGAAAGATGGAAAGTATATACAGAAGCCATCCCTAACTTTGATGATACAAAATTAAGAGCAAATAAACTATTAGACCAAATCAGCACAGTAAAAGATACATCTGATTACTTGTGGTACACTTTTAGGTTTAATGACAAAGCTCCTATTGTTCAATCCTTGCTTAGAGTATTAAGTCAAGGGCATGTTTTGCATGCATTCATCAATGGAGTTTTAGTAGGCTCTGGACATGGGACACTTGACAGTAGATCTTTCGTCACAGAATGCAAAGTAAATCTGACAAATGGGATGAACGTCTCCTTACTAAGTGCAACTGTTGGAATGCCTAGAGCAAAGTTGCTGGTTTTGCGTTCAGTAAAAGTTCAAGGCAGAGATTTCACTAATCAAGCATGGGGATATCAGGTTGGCCTGCAAGGAGAGAAACTGCAAATCTATACAGATATTGGATCAAGTAAAGTTCAGTGGGGAAATTTTCAAAGTTCTGTGAAACCACTCACATGGTACCAGACTACATTTGATGCACCAGCAGGCAAAGATCCTGTAGTGCTTAACCTTGGTTCTATGGGAAAGGGAGAAGCTTGGGTTAATGGCCAAGGTATTGGTCGATATTGGTTATCTTTTCACACAGAAAACGGGGATCCTTCACAAACATGGTATCATATACCACGATCCATCCTAAAATCTACTGGGAATCTACTAGTTCTATTTGAAGAAGAAACTGGGAACCCACTGGAAATTACTCTAGACACAGTTATATATAAGTGA 2082 0.4049 MMLNLSSCFFYSSLLLLLTAAAFVTVLATVTYDGRSLIIDGQHRILFSGSIHYPRSTPEMWPDLITKAKEGGLDVIQTYVFWNLHEPQQGQYNFSGRRDLVRFIKEIQAQGLYVTLRIGPYIESEWTYGGLPLWLHDIPGITFRTDNNQYKFHMQRFAAKIVNLMKSANLYASQGGPIILSQIENEYGNVEKAYHEQGTSYIRWAAQMAVGLNTGVPWVMCKQDDAPDPMINACNGMKCGTTFKGPNSPNKPSIWTENWTSFYQAFGEKPYLRSAEDIAYNVALFIAKKGSYVNYYMYHGGTNFDRTASAYIITAYYDEAPLDEYGLVRQPKWGHLKELHAAIKSCSDTLLNGTQSIITLGSQQQAYVFRRSSKECAAFLENSGGKESTVKFQNIPYVLPPRSISILPDCKKVTFNSGKVSTQNNARVRAMIPQLKFNTAERWKVYTEAIPNFDDTKLRANKLLDQISTVKDTSDYLWYTFRFNDKAPIVQSLLRVLSQGHVLHAFINGVLVGSGHGTLDSRSFVTECKVNLTNGMNVSLLSATVGMPRAKLLVLRSVKVQGRDFTNQAWGYQVGLQGEKLQIYTDIGSSKVQWGNFQSSVKPLTWYQTTFDAPAGKDPVVLNLGSMGKGEAWVNGQGIGRYWLSFHTENGDPSQTWYHIPRSILKSTGNLLVLFEEETGNPLEITLDTVIYK* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0609 693 PANTHER BETA-GALACTOSIDASE RELATED 14 690 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 SUPERFAMILY Galactose-binding domain-like 569 690 IPR008979 -
Amo08g0609 693 Pfam Glycosyl hydrolases family 35 36 342 IPR031330 -
Amo08g0609 693 Gene3D Glycosidases 24 347 - -
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 629 645 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 291 306 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 602 616 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 254 269 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Amo08g0609 693 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Amo08g0609 693 Gene3D - 544 691 - -
Amo08g0609 693 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Amo08g0609 693 PANTHER BETA-GALACTOSIDASE 14 690 - -
Amo08g0609 693 SUPERFAMILY Galactose-binding domain-like 404 523 IPR008979 -
Amo08g0609 693 Pfam Beta-sandwich domain in beta galactosidase 350 420 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0609 Amo-Chr8 10904021 10912562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0609 14 690 Glycoside Hydrolase AT5G63800 58.739 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0609 - - gmx:100789220 1100.89