Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0569 ATGCAAAGGTTTAGCCTTTGCACAAGTACTAAAAATACATTAACGTACCCATCGCTCTTGTTTTCTTCCATAAGGAACCACATTAGTCAAGGTTCTCATAAATGTGCTCTTCTTCTGTATAAACAAACTCGCCGCGAAGGTCTCTATGATCCCAACGTTGTCCCTTTGTTGTTCAAGGCTTGTGTTTCTTTTTCAATTCTTCACCACGTTAAGGCCTTGCATGCCGAGTCCATTAAAGCTGGTTCACATTGTGATGTGTTCATTGGAACAGCATTGGTTGGAACTTATTCAAAATGTGGTCTCCTTGGGGACTCCCGCAAGGTGTTTGATACAATGCCTGACAGAAATGTTGTCACTTGGAATGCAATGATTGGTGGGTACTTGAGAGCTGGGGACAAACAATCTGCCTCCTCAATGTTTGAGGCGATGCCGGGGAAGACTCCCGTGTCTTGGAGCCAGATGATTGATGGGTTTGCAAGGAACGGGGATACTGCTGCTGCTAGGAGGTTGTTCAATAAGGTTCCGGACGAGGCGAAGAACGTAGTGACGTGGACTGTGATGGTTGATGGGTATGCTAGGAATGGGGATATGGAAGCTGCCAGGGAGATCTTTGAACAGATGCCAATGAGGAACTGCTTTGTGTGGTCATCTATGATTTGTGGTTATTGCAAGAAGGGCAGTGTCGAGGAGGCTGGGGTGATTTTCGAGCGCGTTCCAGAACGCAACGTGGAGATTTGGAATTCAATGATTGCTGGGTATGTCCAAAATGGATTTGGTGAAAAAGCACTGCAGCTTTTTGAGGAAATGAAGGGTGAAGGGTTTGAACCGGATGAATTCACTGTTGTTAGTGTTTTATCTGCATGTTCTCAGCTGGGACTCCTGGATGCCGGTAAGGAAATCCATAACATGATAAAGCAGAAAGGGATGAGGTTGAGTCCCTTTGTTGTGAGTGGATTGGTTGACATGTATGCAAAATGTGGGGACCTGGTCAATGCAAGGTTGGTATTTGAAGCATCAGAGTCCATTGAGAAGAACATCATCTGCTGGAACGCAATGATTTCAGGCTTTGCCATCAATGGAAAATTCCATGAAGTCCTTGAGTGTTTTGGCAGATTGGAGGAATCAAATATAAAGCCTGATCCAATCACCTGTCTCATTGTGCTCTCTGCTTGTGCTCATGGTGGTTTGGTAAATGAAGCTTTGGAAGTAGCAGCTAAAATGGAAAGATATGGAATTGAAATAGGAATCAGACATTATGGATGCATGGTTGACCTATTGGGAAGAGCAGGGAGGTTAAAGAGGGCTTATGACTTGATAAAGAGAATGCCAATGAAACCGAATGACGCCGTTTTTGGGGCACTGCTTGGTGCGTGCCGGATTCATTCAGACGTGCAAATGGCAGAACAAGTAATGAAGTTACTCGGTGCAAGCACTGTTTCAAGTTCTGATTCTTTCAATGTGCTTCTGTTCAATACCTATGCAGCTTCTGAAAAATGGGAGAAATGTGAACAGATGAGGATCAGAGTAGATGAAAGAATTCAAAAGACACCTGGGTGCAGTTCATTCATCTTTAGTGCTTCGTCCATGTTCACTTGGACAAAGTAA 1605 0.4424 MQRFSLCTSTKNTLTYPSLLFSSIRNHISQGSHKCALLLYKQTRREGLYDPNVVPLLFKACVSFSILHHVKALHAESIKAGSHCDVFIGTALVGTYSKCGLLGDSRKVFDTMPDRNVVTWNAMIGGYLRAGDKQSASSMFEAMPGKTPVSWSQMIDGFARNGDTAAARRLFNKVPDEAKNVVTWTVMVDGYARNGDMEAAREIFEQMPMRNCFVWSSMICGYCKKGSVEEAGVIFERVPERNVEIWNSMIAGYVQNGFGEKALQLFEEMKGEGFEPDEFTVVSVLSACSQLGLLDAGKEIHNMIKQKGMRLSPFVVSGLVDMYAKCGDLVNARLVFEASESIEKNIICWNAMISGFAINGKFHEVLECFGRLEESNIKPDPITCLIVLSACAHGGLVNEALEVAAKMERYGIEIGIRHYGCMVDLLGRAGRLKRAYDLIKRMPMKPNDAVFGALLGACRIHSDVQMAEQVMKLLGASTVSSSDSFNVLLFNTYAASEKWEKCEQMRIRVDERIQKTPGCSSFIFSASSMFTWTK* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0569 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Amo08g0569 534 SUPERFAMILY TPR-like 103 269 IPR011990 GO:0005515
Amo08g0569 534 Gene3D Tetratricopeptide repeat domain 5 147 IPR011990 GO:0005515
Amo08g0569 534 Gene3D Tetratricopeptide repeat domain 211 296 IPR011990 GO:0005515
Amo08g0569 534 Gene3D Tetratricopeptide repeat domain 148 210 IPR011990 GO:0005515
Amo08g0569 534 Gene3D Tetratricopeptide repeat domain 297 528 IPR011990 GO:0005515
Amo08g0569 534 Pfam PPR repeat family 242 288 IPR002885 -
Amo08g0569 534 Pfam PPR repeat family 344 392 IPR002885 -
Amo08g0569 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 177 IPR002885 -
Amo08g0569 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Amo08g0569 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Amo08g0569 534 PANTHER OS01G0913400 PROTEIN-RELATED 21 521 - -
Amo08g0569 534 PANTHER BNACNNG13520D PROTEIN 21 521 - -
Amo08g0569 534 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Amo08g0569 534 TIGRFAM PPR: pentatricopeptide repeat domain 118 143 IPR002885 -
Amo08g0569 534 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Amo08g0569 534 TIGRFAM PPR: pentatricopeptide repeat domain 182 212 IPR002885 -
Amo08g0569 534 TIGRFAM PPR: pentatricopeptide repeat domain 149 173 IPR002885 -
Amo08g0569 534 TIGRFAM PPR: pentatricopeptide repeat domain 382 414 IPR002885 -
Amo08g0569 534 TIGRFAM PPR: pentatricopeptide repeat domain 214 244 IPR002885 -
Amo08g0569 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Amo08g0569 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Amo08g0569 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Amo08g0569 534 Pfam PPR repeat 149 173 IPR002885 -
Amo08g0569 534 Pfam PPR repeat 118 144 IPR002885 -
Amo08g0569 534 Pfam PPR repeat 90 117 IPR002885 -
Amo08g0569 534 Pfam PPR repeat 418 443 IPR002885 -
Amo08g0569 534 Pfam PPR repeat 182 212 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0569 Amo-Chr8 10450460 10452064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0569 50 520 Glycoside Hydrolase AT3G49170 30.579 8.51e-61 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0569 - - gmx:100802813 751.125