Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0549 ATGGTTGGAAAGGAGAACCTGAGAACTGAGGACTTGAACTTGTGCTTTGAGAAGCTCATGATGGTTGCTGGTGGTGGTGGTGGTGGTTGTGGTGGTGAGAAAGGAGGGAAGATGAAAGCCGGGGTGATCACTGAGTGGAAGGATATTCCTGTGGAGCTTTTGATGCAGATTTTGTCCCTTGTGGATGATCAAACTGTGATCACAGCTTCTGGTGTTTGTCGTGGATGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTGTCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGCCCTTTCTCTTGTTCCGAAATTCACAAAACTTCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAACACAGTTGAAAGGATTGCAAATTATTGTCATGACCTGCAGATTCTGGACCTGAGTAAAAGCTTCAAACTCACCGATCGGTCGCTGTATGCCGTAGCCCACGGTTGTCCTGATCTCACTAAACTCAACATCAGTGGCTGCTCTGCTTTTAGTGACAATGCTCTGGCGTACCTTGCCGGTTTCTGCAGGAAGCTGAAAGTCCTAAACCTCTGCGGATGCGTTAGAGCAGCAACCGATACTGCGTTACAGGCTATTGGACACTACTGTAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGAGAATGTTGGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGTCCTGATCTAAGAATAGTGGACCTGTGTGGCTGTGTCCTTATAACAGATGATAGTGTGATTGCATTGGCAAGCAGATGCCCAAGGCTCAGGTCCCTAGGACTATACTACTGCAAGAACATAACAGATAGGGCAATGTACTCATTGGCACAGAGCAAAGTGAACAAGAGAATGTGGGGATCAGTGAAAGGAGGAGGAGGAAATGATGAAGACGGGCTTAGAACTCTCAACATAAGCCAATGCACAGCACTGACACCATCTGCAGTTCAAGCTGTTTGTGACTCATTCCCTTCACTCCACACATGCTCAGGTAGACACTCACTCATCATGAGTGGTTGCCTCAACTTGACTTCAGTTCATTGTGCTTGTGCTGTTCATGCTCACCGTGCTATCAACAATTTCCCTCACCCTGCTCATTGA 1134 0.463 MVGKENLRTEDLNLCFEKLMMVAGGGGGGCGGEKGGKMKAGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNNLALSLVPKFTKLQTLILRQDKPQLEDNTVERIANYCHDLQILDLSKSFKLTDRSLYAVAHGCPDLTKLNISGCSAFSDNALAYLAGFCRKLKVLNLCGCVRAATDTALQAIGHYCNQLQSLNLGWCENVGDVGVMSLAYGCPDLRIVDLCGCVLITDDSVIALASRCPRLRSLGLYYCKNITDRAMYSLAQSKVNKRMWGSVKGGGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAINNFPHPAH* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0549 377 Pfam Leucine Rich repeat 213 236 IPR001611 GO:0005515
Amo08g0549 377 SUPERFAMILY RNI-like 83 289 - -
Amo08g0549 377 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 359 - -
Amo08g0549 377 PANTHER UNCHARACTERIZED 1 359 - -
Amo08g0549 377 SMART LRR_CC_2 134 159 IPR006553 -
Amo08g0549 377 SMART LRR_CC_2 213 238 IPR006553 -
Amo08g0549 377 SMART LRR_CC_2 308 333 IPR006553 -
Amo08g0549 377 SMART LRR_CC_2 160 185 IPR006553 -
Amo08g0549 377 SMART LRR_CC_2 265 290 IPR006553 -
Amo08g0549 377 SMART LRR_CC_2 107 133 IPR006553 -
Amo08g0549 377 SMART LRR_CC_2 186 212 IPR006553 -
Amo08g0549 377 SMART LRR_CC_2 239 264 IPR006553 -
Amo08g0549 377 SUPERFAMILY F-box domain 44 81 IPR036047 GO:0005515
Amo08g0549 377 Gene3D Ribonuclease Inhibitor 86 301 IPR032675 -
Amo08g0549 377 Gene3D - 43 85 - -
Amo08g0549 377 Pfam F-box-like 47 80 IPR001810 GO:0005515
Amo08g0549 377 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0549 K03875 - gmx:100797840 662.914