Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0287 ATGTTTTCTGAAGGATTGGGGGCAGACGAATCCCTTTGTCAAGATGTCCAGAGTTTGAGCGTGTCCAAGCGTCTTGTGAGGAGTGTCAGCCAGAAGCTGAGAAAGAAGAATAACAGAAGTGCGGGGGAAGAAGATGATGATCTGAAGGGTGTTGCTTTGAGATGCCTAACTCTGTACAGTCGAGGTGGGGGCTGCAAGGTAGGCGCCGACACCAGTGATGAATTCAGTGATTCAAATGGTAGGAGGAGATCGAGTGCCAGTGAAGAGGGTAGGGGATATAAACCTATTTGTGGCCCTGAAGAAACTGCCGTGGATTGTTTCTCGTATGGGGTGAGGGACATATTTTGGCGGAGACACTCTAGAAAGAATTCTGAAATTGAAGAATTGGCWGCAAATACTAGAATGCATATCTTTCTCCCGGACGATGTTCTGGAAATGTGTTTGGTCCGGCTCCCGTTGACAAGTCTCATGAATGCTCGCCTTGTGTGCAAGAAATGGAGGGCATTGACTACCACTCCTAGATTCCTCCAAATGAGAAGAGAGGGTTCATATCAAAATCCATGGCTGTTTCTGTTTGGTGCAGTTAAAGATGGCTTTTGCTCTGGGGAGATACATGCATTGGATGTGTCTATGAATCAATGGCATAGGATAGATGCCGAATACCTAAGGGGAAGGTTCTTGTTCTCTGTTGCCAGTATACAGGATGATATCTTCATTGTTGGAGGATGTTCTAGCTTGACCAGCTTTGGGAGGGTGGATAGGAGCTCATTCAAGACGCACAAAGGGGTGGTCGTATTTAGTCCCTTGACGAAGTCTTGGCGTAAAATACCATCTATGAAATATGGAAGATCAGTTCCTATATTAGGAGTTTCTGAGGTCAGTTCAGATTTCCCAACATGTCAAGGTCATCAAAGCCGGCAGGATAGACGTCCAAGATCAAGGATCGGTGGGGTGTCGGACGTCTACGAGGATCCTCATAAGCTCTCAATGAGACGTCATTGCAGATCTTCTTTCAATGAGAGTGAAGCTTCATCTGTTACCAGTAGAAGGACATACAAATTCCTTAGACAAAAGAGTGATCATTCAAGTTCAAAGGGAAGTAGAAGAGTTTTGCTGATAGCTGTAGGAGGTCTGGGATCATGGGACGAGCCTCTGGACTCTGGAGAAATATATGATTCTGTATCAAATAAATGGACTGAAATCCAGCGATTGCCTTTTGATTTTGGGGTTGCATGRTCTGGAATTGTTTGTGGCAAGATGTTTTATGTTTATTCCGAGACGGACAAGCTTGCGGCTTATGATGTTGAACGGGGATTCTGGATATCAATTCAAACCTCTCCATTTCCGCCSCGTGTTCTTGAATACTACCCCAAACTTGTATCTTCCGATGGCCGTCTTTTCATGCTKTCTGTGTCCTGGTGTGAAGGGGATGGTCAAATCGGGCGCCGGAACAAGGCTGTTAGAAAATTATGGGAGTTAGATCTCATGTATCTTACCTGGACTGAAGTCTCAGTGCATCCTGATGCCCCAATGGATTGGAATGCAGTATTTGTGGCAGACAAAAGCCTTATTTTTGGGATAGAGATGTTCAAGATATTTGGTCAGGTGTTGGATTTTTTKACTGTATGTGATGTGTCTGATATGGCACGCTGGCACCATATTTCAAGGAATCATGTCACTCATGWGCTGGATGCTTCTTCTTGCTTGACCAAAACTGTGGCAGTGCTACATCTTTGA 1737 0.4485 MFSEGLGADESLCQDVQSLSVSKRLVRSVSQKLRKKNNRSAGEEDDDLKGVALRCLTLYSRGGGCKVGADTSDEFSDSNGRRRSSASEEGRGYKPICGPEETAVDCFSYGVRDIFWRRHSRKNSEIEELAANTRMHIFLPDDVLEMCLVRLPLTSLMNARLVCKKWRALTTTPRFLQMRREGSYQNPWLFLFGAVKDGFCSGEIHALDVSMNQWHRIDAEYLRGRFLFSVASIQDDIFIVGGCSSLTSFGRVDRSSFKTHKGVVVFSPLTKSWRKIPSMKYGRSVPILGVSEVSSDFPTCQGHQSRQDRRPRSRIGGVSDVYEDPHKLSMRRHCRSSFNESEASSVTSRRTYKFLRQKSDHSSSKGSRRVLLIAVGGLGSWDEPLDSGEIYDSVSNKWTEIQRLPFDFGVAXSGIVCGKMFYVYSETDKLAAYDVERGFWISIQTSPFPPRVLEYYPKLVSSDGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWTEVSVHPDAPMDWNAVFVADKSLIFGIEMFKIFGQVLDFXTVCDVSDMARWHHISRNHVTHXLDASSCLTKTVAVLHL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0287 578 SMART kelc_smart 236 293 IPR006652 GO:0005515
Amo08g0287 578 SMART kelc_smart 371 415 IPR006652 GO:0005515
Amo08g0287 578 MobiDBLite consensus disorder prediction 298 317 - -
Amo08g0287 578 PANTHER OS09G0555300 PROTEIN 1 578 - -
Amo08g0287 578 Gene3D - 152 306 IPR015915 GO:0005515
Amo08g0287 578 ProSiteProfiles F-box domain profile. 133 179 IPR001810 GO:0005515
Amo08g0287 578 MobiDBLite consensus disorder prediction 303 317 - -
Amo08g0287 578 Gene3D - 345 563 IPR015915 GO:0005515
Amo08g0287 578 SUPERFAMILY Kelch motif 186 526 IPR015915 GO:0005515
Amo08g0287 578 Pfam Kelch motif 227 283 - -
Amo08g0287 578 Pfam F-box domain 139 175 IPR001810 GO:0005515
Amo08g0287 578 SMART fbox_2 139 179 IPR001810 GO:0005515
Amo08g0287 578 SUPERFAMILY F-box domain 138 200 IPR036047 GO:0005515
Amo08g0287 578 PANTHER OS09G0555300 PROTEIN 1 578 - -
Amo08g0287 578 Pfam Kelch motif 372 403 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0287 Amo-Chr8 5190950 5194009 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0287 - - gmx:100813797 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0287 08 5190950 5194009 Amo17g1998 17 102486801 102489817 hybridization