Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3091 ATGTCAAAGCAAGCAAGTTCATACGTACCAAAGAACATCCTCATAACTGGTGCAGCTGGTTTCATAGCCTCTCATGTCACCACTAGGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCACTTGATAAGCTAGATTATTGTTCTAACATCAAGAATCTACAATGTTGTACTTCATCACCTAACTTCAAGTTCATCAAGGGTGACATAGCTAGCTCAGACATGGTGAATCATCTCTTGATAGAAGAGGAAATAGACACAATCATGCACTTTGCAGCACAAACCCATGTGGACAATTCATTTGGAAACTCCATGGAATTCACCTATAACAATATCTATGGCACCCATGTTCTTCTAGAAGCATGTAGAGTAACAAATTGCATTAAAAGGTTCATCCACGTAAGCACGGACGAAGTTTACGGCGAGACGGATTCCGAGACTGACATCGGAAACCATGAAGCCTCCCAACTTCTTCCAACCAATCCTTATTCCGCCACGAAAGCAGGCGCCGAGATGTTGGTAATGGCTTATCATAGATCTTACAATCTTTCTACAATAACTACTAGAGGAAACAATGTGTACGGTCCAAACCAATATCCTGAGAAGCTTGTCCCTAAATTCGTCCTTAGGGCGATGAAGGGACAAAAGCTTCCCATCCACGGCGACGGATCCAATGTTAGGAGCTACCTTTATTGCGGCGATGTAGCTGAAGCGTTTGATGTTATTCTCCACAAAGGAATGATTGGCCAAGTCTATAACATTGGCACCAAGAAAGAGAGAAGTGTATTAGATGTGGCAGAGCATATTTGCAAGCTTTTCAACATAAATTCAAAGGATGTTATTGAGTTTGTTCAAGATAGGCCATTTAATGATAAGAGATATTTCCTAGATGATCAAAAGCTCAAGAATCTAGGATGGGAGGAAAGAACTCCTTGGGAAGAAGGACTAAAGTTGACAATTGATTGGTACAAAAAGAATCCGGATTGGTGGGACGTGTCGAATGCCCTGAATCCGCATCCGCGCTTCTCAGCCACCAATCTGGCTGACGAAGCTCAATGGTCGTTTCAATGTGGATACTCAAGGCTAGGAAGGTCATTTACTGAAGTAGGACGAAATAAAACATTTGTGAAATTTTTGATATATGGGAAGACGGGTTGGATTGGAGGGTTGCTAGGGAAGCTTTGTGATGAAGAAAGAATCCAATGGGAGTATGGAAAGGGAAGATTAGAAGATAAAAAGTCATTAATGGAGGATATAAGTAGGGTAAAGCCAACACATGTGTTAAATGCAGCTGGAGTGACTGGAAGGCCAAATGTTGATTGGTGTGAATCACATAAAGTTGAGACAATAAGGACTAATGTTGTTGGGACATTAAATTTGGCTGATGTTTGCATTGGCTTCAAGGAGGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCCAAGACTAAGGCCATGGTGGAGGATCTGTTGAAAAATTATGAGAACGTTTGCACACTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCTAGAAATTTCATTACCAAGATTTCTCGTTACAACAAGGTGGTAGATATACCTAACAGCATGACCGTGCTAGATGAGTTGTTACCTATATCCATTGAGATGGCTAAGAGGAACTTAAAAGGGATATGGAACTTCACCAATCCTGGGGTCATAAGCCACAATCAAATATTAGAATTGTACAGGGACTATATTGATCCAAAATTCAAGTGGCAAAATTTTAATTTGGAAGAACAAGCAAAGGTTATTGTTGCTCCCAGGAGTAACAATGAAATGGATGCCTCCAAGCTCAAGAAAGAGTTCCCAGACATGCTGAACATCAGAGATTCCATTATCAAGTATGTCTTTGAGCCCAACAAGAAAACTTAA 1902 0.4064 MSKQASSYVPKNILITGAAGFIASHVTTRLINKYPSYKIVALDKLDYCSNIKNLQCCTSSPNFKFIKGDIASSDMVNHLLIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCIKRFIHVSTDEVYGETDSETDIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYNLSTITTRGNNVYGPNQYPEKLVPKFVLRAMKGQKLPIHGDGSNVRSYLYCGDVAEAFDVILHKGMIGQVYNIGTKKERSVLDVAEHICKLFNINSKDVIEFVQDRPFNDKRYFLDDQKLKNLGWEERTPWEEGLKLTIDWYKKNPDWWDVSNALNPHPRFSATNLADEAQWSFQCGYSRLGRSFTEVGRNKTFVKFLIYGKTGWIGGLLGKLCDEERIQWEYGKGRLEDKKSLMEDISRVKPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCIGFKEEDKPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNQILELYRDYIDPKFKWQNFNLEEQAKVIVAPRSNNEMDASKLKKEFPDMLNIRDSIIKYVFEPNKKT* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3091 633 Gene3D - 369 633 - -
Amo06g3091 633 Gene3D - 204 326 - -
Amo06g3091 633 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Amo06g3091 633 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 465 631 - -
Amo06g3091 633 Gene3D - 13 317 - -
Amo06g3091 633 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 1 464 - -
Amo06g3091 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 331 IPR036291 -
Amo06g3091 633 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 464 - -
Amo06g3091 633 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 465 631 - -
Amo06g3091 633 Pfam GDP-mannose 4,6 dehydratase 14 317 IPR016040 -
Amo06g3091 633 Pfam Polysaccharide biosynthesis protein 407 466 IPR003869 -
Amo06g3091 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 377 624 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3091 Amo-Chr6 97853392 97857835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3091 12 323 Miscellaneous Gene Families AT1G02000 25.444 1.14e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3091 K12450 - gmx:100776241 1152.5