Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3031 ATGAGTAGACCAAATACGCGAAGCAAAAACAAGAGGCAGAGGCAAGGGGATGATGTTGATAGCACTACCGAAATATGGAGGAAAATTCACAAAACGGGTGGTATAACTGAAGAAGATATAAACCAATTGTATATGATTTGGAAGCCGGTTTGTTCAGGTTGCCGTGTCAATGCTAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCTCCTCCAAATGGATCGCGGAAGTCTGGCTTGTGGATGAAGACGTCAGATTTTGTTGAAAGTCTTGGCCCCGACCCAACTAAGGATCTTCGCGCATCTGCTTCTTCACCTGCGGGTCTAACAAATCTTGGTGCAACCTGCTATGCCAACAGTATACTTCAGTGCTTGTACATGAATAAATCTTTCCGGGAAGGCATATTTTCTGTAGAACCAGAAGTTTTGCAACAGCAACCGGTGTTAAATCAGCTGGTTCGGCTTTTTGTACAGTTGCATGTTAGCAAAATGGCTTTCATAGATTCATCCCCATTCGTAAAAACACTTGAGTTAGACAATGGAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTTTCATTGCTGGAGCGTTGCCTGAGCCATTCCAAAATTGCAAAGGCAAGAACAATAGTTCAAGATCTTTTTCGTGGAAATGTGTCTCACGTGACAAAGTGCTCGCAATGTGGAAAAGACTCTGAAGCTTCTTCGAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTACAAAGTTTATATGAGAGCCTAGATGATTACCTTGCTATTGAAGAGCTTCATGGAGACAACCAATATTATTGCGACTCATGTAGAGCAAGAGTTGATGCAACTCGTAGCATCAAGCTCCGCTCATTGCCCGAAGTACTTAATTTTCAACTTAAACGATATGTTTTTCTTCCAAAGACTACAACAAGGAAGAAAATTACTTCGGCATTTTCATTTCCTGCTGAACTTGATATGCGCCATAGATTGTTTGAATCATCTCCTTTTGAGTTGATATATGACTTGTCAGCTGTACTAATTCACAAGGGAAGTGCTGTTAATAGTGGTCACTACATTGCTCATATTAAGGATGAAAATACTGGGCAATGGTGGGAATTTGATGATGAAAATGTCACTAACTTAGGTCGTCATCCCTTTGGTGAAGAAGCTTCAAATTCTACTTCTAAATTAGCCAAGACTGATGTAGTTCATAGTAATTGCTCTGAAGCAAAGATAGCTGACAGTAATGGGAATGGTTTAGATGCCAAACTGTCTCACTCTTCCCATGTGGAGACATTTTCTTCTAGCGATGCATACATGTTGATGTACCATCTTAAACGTTCGAAGAATGTTGATGGAAAAGATGTTATGTTTTCTGGTACTAACCATAAAGGAGAGCGTGATGCAGTTACTGCCCAGGATGATGCTTGTCTTCCTTTCCATCTTCGTGAAGAGATTAAAAATATCAATGCCTCATATCTTGATGCTTGTGAACAGTACAAGCAAAAGAAAGAGTTAGAATTGAGTCGTATCAATGAGCGGAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCCCCTGTTCAGCCACTGAAGCAACCATTTTTTTGGATTTATAGTGACTGGCTTCGCCAGTGGGCTGACAACATCATTCCAACTGCTGTTGACAACACATCTATTCAATGTTCACATGGGAAAGTCCCAGTATCAAAGATTACCACAATGAAAAGATTGTCTTCTCAAGCATGGGATAAGCTACTCTCTAAGCATGGTGGGGGGCCCACACTTTCTCATGATGATTGCTGTTGGGATTGTCTGATTGAAGGAGCTCGGAATGTGGTGTCAGCTGATACCTATCGGGATCGAAGGGAATCACTGAAGCAGCTTGCACGGGATGTTCTAGATGGACATTGTGAAGATGGAAAGTACTACATTTCCAGGCCATGGTTACAGCAATGGTGGAAACGAAAAGTTCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCTATTAGCTGTCCACATGGGCAGCTTATGCCTGAACAAGCTGCTGGTGCTAAGAGAGTGCTTGTTCCTGAGGATTTTTGGCTCTTCTTATATGAAGATTCTATCTCTGTAAAACCTGATGATCCTTTGGGTTGCCCTACTTTCCCTGTTGACTCCAGAGAGTGTTCTGAATGCAGTAATGAATTATCTGAAGTGGCTTGCTTTGAGGATTCATTGAGATTAGTGAAGCAAAGACAACGTCAGAAACATGAGAAACTATTCCTGGGTAAAAGTATGCCGCTCTATCTGCATTGCAAGTATTTCTTAGTTCCATCTTTGTGGATTTCAAAATGGAGAAACTATGTTAATCCATCTGTAAAGAATTCAGATAAACCTGAAACATTAGATGGGGTAATTGATTCACTGAAGTGTGAAAAGCACTCACGACTAGTTGAGAGGCCTCCTGAATTGGTTTTCAGACGCAGTGCTATAGTTCCAAGAGAGTCTTCTGCAAGTGGTGTAACAGTTATATCTGAAAATGATTGGAAACTCTTATGTGAAGAATGGGGTGGTAATGAGGCCAAAGGAATATCTGCCAGTATTGAAAATATTGATGAGTCTGAGAATGTTTTGATTGGATCATGTGAAGAGTTGCCAGTATGTGAGGATCAGTTGGGTTCTTCAGATAAAGTGAATAATGAAACTGAGAATGGACAATTCGTGATCAAGACTTGTCCAGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGTGAGTTGATGCAGAAGCTAAACTATTGCAATGAGAACATAACTGTAATACTTGTCCGTGGAAAAGAGGTACCTAGATCAATATTGGAGGCTTCGAAGGGTTTTGTTGAAACAGAACGGCGGGCTTCTAAACGCACCCGTAAAACTAAAAATGGGAGTTCTATTAGTCTGAAAGTTTCTGCTTCAACATCAATGTACCAGCTTAAAATGATGATATGGGAATCCTTTGGGGTGGTCAAGGAAAATCAGTTACTACAAAAGGGCGATAAGACAATTGACATTGATGATGAATACACTACACTTGCAGATGTAAACATATTTGCTGGAGATCAGATTATAGTGAGGGATTCTGAAATCCATGAAAATCGAGATATTGCCGAGGAACTTTATGATGAGAAAATGGATACACAGCATACCGAGGAAGGGTTCCGGGGAACACTTTTGACCTCCAATGCTTCATCCCAGGCTGTTTAG 3249 0.4103 MSRPNTRSKNKRQRQGDDVDSTTEIWRKIHKTGGITEEDINQLYMIWKPVCSGCRVNAKDNPNCFCALVPPPNGSRKSGLWMKTSDFVESLGPDPTKDLRASASSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPEVLQQQPVLNQLVRLFVQLHVSKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKIAKARTIVQDLFRGNVSHVTKCSQCGKDSEASSKMEDFYELELNVKGLQSLYESLDDYLAIEELHGDNQYYCDSCRARVDATRSIKLRSLPEVLNFQLKRYVFLPKTTTRKKITSAFSFPAELDMRHRLFESSPFELIYDLSAVLIHKGSAVNSGHYIAHIKDENTGQWWEFDDENVTNLGRHPFGEEASNSTSKLAKTDVVHSNCSEAKIADSNGNGLDAKLSHSSHVETFSSSDAYMLMYHLKRSKNVDGKDVMFSGTNHKGERDAVTAQDDACLPFHLREEIKNINASYLDACEQYKQKKELELSRINERRQEVRSVLAEAPVQPLKQPFFWIYSDWLRQWADNIIPTAVDNTSIQCSHGKVPVSKITTMKRLSSQAWDKLLSKHGGGPTLSHDDCCWDCLIEGARNVVSADTYRDRRESLKQLARDVLDGHCEDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHGQLMPEQAAGAKRVLVPEDFWLFLYEDSISVKPDDPLGCPTFPVDSRECSECSNELSEVACFEDSLRLVKQRQRQKHEKLFLGKSMPLYLHCKYFLVPSLWISKWRNYVNPSVKNSDKPETLDGVIDSLKCEKHSRLVERPPELVFRRSAIVPRESSASGVTVISENDWKLLCEEWGGNEAKGISASIENIDESENVLIGSCEELPVCEDQLGSSDKVNNETENGQFVIKTCPEVCESCIGEKESCELMQKLNYCNENITVILVRGKEVPRSILEASKGFVETERRASKRTRKTKNGSSISLKVSASTSMYQLKMMIWESFGVVKENQLLQKGDKTIDIDDEYTTLADVNIFAGDQIIVRDSEIHENRDIAEELYDEKMDTQHTEEGFRGTLLTSNASSQAV* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3031 1082 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1052 - -
Amo06g3031 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Amo06g3031 1082 SUPERFAMILY Ubiquitin-like 974 1041 IPR029071 -
Amo06g3031 1082 SMART dusp 531 602 IPR006615 GO:0004843
Amo06g3031 1082 Gene3D Cysteine proteinases 93 450 - -
Amo06g3031 1082 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Amo06g3031 1082 ProSiteProfiles DUSP domain profile. 620 722 IPR006615 GO:0004843
Amo06g3031 1082 SUPERFAMILY Cysteine proteinases 106 447 IPR038765 -
Amo06g3031 1082 ProSiteProfiles DUSP domain profile. 513 605 IPR006615 GO:0004843
Amo06g3031 1082 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1052 - -
Amo06g3031 1082 CDD Ubl_USP48 972 1075 IPR044743 GO:0004197|GO:0004843|GO:0016579
Amo06g3031 1082 MobiDBLite consensus disorder prediction 1 21 - -
Amo06g3031 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Amo06g3031 1082 ProSiteProfiles DUSP domain profile. 748 868 IPR006615 GO:0004843
Amo06g3031 1082 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Amo06g3031 1082 Coils Coil 498 525 - -
Amo06g3031 1082 Gene3D - 971 1042 - -
Amo06g3031 1082 Gene3D - 745 864 IPR035927 -
Amo06g3031 1082 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Amo06g3031 1082 SUPERFAMILY DUSP-like 516 604 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3031 Amo-Chr6 96777338 96785960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3031 105 385 Miscellaneous Gene Families AT4G31670 30.820 1.08e-27 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3031 - - gmx:100795556 1825.45