Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3010 ATGGCCAACCCTGCCAATCCCTCAACCCCCTCCCAATCCCAATCCCGAACCCCAACCCCACTCCAATTTCTCGCCGCGCGATTTCTCCGCAATTGCCGATATATTCGCCGACTCTTCCATCTCTCCCGGATCCTACTGCTCGCCGTGTTTGACCGTTTCGGTTCGTCGCCCAAGCTGCTTCACTCGCTGTTCCTGTGGGCCGAGAAGCAACCCGGGTTCAGACCTAATTCGAAGCTCTTCGACGCTGTGGTCAACGCTCTCGCTAAGTCCAGGGAGTTTGACTCCGCTTGGACGCTGATTCTTCATCAGATCGATGATGGAAACGACGAGGGAGAAGCTTTGGTTTCCGTTGCCACCTTCGCTATCATGATTCGACGCTATGCACGTGCAGGTATGGTGCAACCTGCAATTCGTACATTTGAGTTTGGAAGAAAGCACAATTCAATTATAGATTCTGGATCGGAATCGAGTTTATTTGAGATATTGTTGGATTCACTTTGCAAAGAAGGGTCTGTTAGGGCAGCTTACGAGTATTTATGTCTAAGAAAGAAGATGACCCAGGGTTGGGTTCCTTCCATTCGGGCTTATAACATAATGTTAAATGGATGGTTTCGGTCAAGGAAACTCAAACACGGTGAGAGACTTTGGGAGGAGATGAAGAAGGAGAATGTAAGACCAACTGTTGTGACATATGGTACCCTTATCGAAGGGTATTGTCGGATGCGTCGAGTTGAAAAGGCGCTMGAGATWGTTGGYGACATGATCAAAGAAGGAATTGCACCAAATGCAATAGTGTATAATCCRATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCCTTGGGGATGATGGAACGATTTCATGTTTTAGAAATTGGCCCTACCGAATCGACATATAATTCTCTGGTRAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCMTTCCAAGCTCCACCACCTATAATTACTTCTTTAGRTACTTCTCAAGATGCGGGAAGATTGAGGAAGGGATGAACTTGTATACCAAGATCATCCAATCCGGTTATACGCCTGATCGGCTAACATACCATCTTTTGGTGAAGATGTTATGTGAAGAGGAAAGGTTAGACTTGGCAGTTCGAGTTAGCAAGGAAATGAGACATAAAGGATTGGACATGGACTTGGCTACAAGTACCATGTTAGTTCATTTGCTATGCAAAATGCGTAGGTTGGAAGAGGCTTTTGCTGAATTCGAGGACATGATACGAAGGGGTATAGTTCCTCAGTACCTTACTTTCCAGAGACTGAATGCGGAGTTAAAGAAACAGGGTATGACTGAAGTGGCACAAAAGCTTTGCAATTTGATGTCTTCCATTCCCCATTCTACCAGCTTGCCAAATACTTACAGTGAAGACAACAATGATGCGCGTGCAAGAAGGAATTCTATAATTCAGAAGGCCCARGCATTTTCTGATATGTTGAAAAACTGTAACGACCCTCGAGAACTCGAAAAGTATAAATGTTCTTCTGAAAATGATGTCTCAAGTGCGAACGGTTTGATAGAGGATATTGAGAGAAAGATAAGTGCCAAACGAACATCTTCTGTGATTTGA 1638 0.4426 MANPANPSTPSQSQSRTPTPLQFLAARFLRNCRYIRRLFHLSRILLLAVFDRFGSSPKLLHSLFLWAEKQPGFRPNSKLFDAVVNALAKSREFDSAWTLILHQIDDGNDEGEALVSVATFAIMIRRYARAGMVQPAIRTFEFGRKHNSIIDSGSESSLFEILLDSLCKEGSVRAAYEYLCLRKKMTQGWVPSIRAYNIMLNGWFRSRKLKHGERLWEEMKKENVRPTVVTYGTLIEGYCRMRRVEKALEIVGDMIKEGIAPNAIVYNPIIDALAEAGRFKEALGMMERFHVLEIGPTESTYNSLVKGFCKAGDLVGASKILKMMISRGFXPSSTTYNYFFRYFSRCGKIEEGMNLYTKIIQSGYTPDRLTYHLLVKMLCEEERLDLAVRVSKEMRHKGLDMDLATSTMLVHLLCKMRRLEEAFAEFEDMIRRGIVPQYLTFQRLNAELKKQGMTEVAQKLCNLMSSIPHSTSLPNTYSEDNNDARARRNSIIQKAQAFSDMLKNCNDPRELEKYKCSSENDVSSANGLIEDIERKISAKRTSSVI* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3010 545 Pfam PPR repeat family 191 240 IPR002885 -
Amo06g3010 545 Pfam PPR repeat family 296 341 IPR002885 -
Amo06g3010 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Amo06g3010 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Amo06g3010 545 TIGRFAM PPR: pentatricopeptide repeat domain 335 367 IPR002885 -
Amo06g3010 545 TIGRFAM PPR: pentatricopeptide repeat domain 229 263 IPR002885 -
Amo06g3010 545 TIGRFAM PPR: pentatricopeptide repeat domain 300 332 IPR002885 -
Amo06g3010 545 TIGRFAM PPR: pentatricopeptide repeat domain 370 402 IPR002885 -
Amo06g3010 545 TIGRFAM PPR: pentatricopeptide repeat domain 407 436 IPR002885 -
Amo06g3010 545 TIGRFAM PPR: pentatricopeptide repeat domain 195 227 IPR002885 -
Amo06g3010 545 TIGRFAM PPR: pentatricopeptide repeat domain 264 297 IPR002885 -
Amo06g3010 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Amo06g3010 545 PANTHER LEAF PROTEIN-LIKE 43 535 - -
Amo06g3010 545 Gene3D Tetratricopeptide repeat domain 24 180 IPR011990 GO:0005515
Amo06g3010 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 43 535 - -
Amo06g3010 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Amo06g3010 545 Gene3D Tetratricopeptide repeat domain 181 310 IPR011990 GO:0005515
Amo06g3010 545 Gene3D Tetratricopeptide repeat domain 311 536 IPR011990 GO:0005515
Amo06g3010 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Amo06g3010 545 Pfam Pentatricopeptide repeat domain 390 442 IPR002885 -
Amo06g3010 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Amo06g3010 545 Pfam PPR repeat 265 288 IPR002885 -
Amo06g3010 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3010 Amo-Chr6 96484949 96487886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3010 72 486 Miscellaneous Gene Families AT4G11690 26.005 9.59e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3010 - - gmx:100793484 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3516 16 144887315 144892324 Amo06g3010 06 96484949 96487886 hybridization