Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2491 ATGAAGACACCACTCCAATCTGTTTTCAGAACCATAACCATTCGTGCTTACTCATCACCACCACCACAACCAACAAAATGGACCAAAAACAAGAACCTCACGACAATGTTCCACAGGTACGTGGACAAGACCAGCGTCTCTTCTTGGAACTCCATCATTGCCGACCTCGCCCGAAGCGGCGACTCCCTCGAGGCCCTCCGCGCCTTCTCCTCCATGCGCAAGCTTTCCCTCATTCCCAACCGCAACACCTTTCCTTGCGCCATCAAATCCTGTTCTTCGCTCTTCGACCTTTGCGCCGGAAAACAGACCCATCAACAGGCTTTCGTCTTTGGCTTTGAATCGGATCTCTTTGTTTCCTCAGCTCTTATTGATATGTACTCTAAGTGTGGCCATTTGGAACACGCCCGAAACCTGTTCGACGAAATTCCCCAAAGGAATGTGGTGTCTTGGACTTCAATTATTGCCGGCCATGTCCAAAATGGTTGCGCTGCTGAGGGCATTCGCTTGTTTAAGGAGCTTTTAGTTGAAGAGAGTGAGAATGTGGGGTGTGTTCAGGAGGAGGAGGAGGATCGTTTCGTGGATCCGATAGTTGTAAGTTCGGTGCTTTCGGCTTGTTCGTGGGTGCGGCAGAAGAGAACTACTGAAGGGGTTCATGGTTTTGTGATTAAGAGGGGGTTCGACGGGTGTTTAGGGGTTGGGAACACGTTGATGGATGCTTATGCAAAGTGTGGGGAGATGGGTGTGTCAAGGAAGGTGTTTGATGGGATGATTGAGAAAGATGCTTACTCTTGGAACTCTATGATTGCTGAATATGCACAAAATGGATTGTCAGCTGAGGCATTCAATGTTTTCAGTGATATGGTGAAGAGTAGCAAGGTCAGTTATAATGCTGTGACATTGTCGGCAGTGTTGTTAGCCTGTGCAAATTCAGGAGCTCTGCAGGTTGGGAAGTGCATACATGGTCAGGTTATAAAGATGGATTTGGAGGATAATGTTTTTGTAGGTACCTCTGTAGTAGACATGTACTGTAAATGTGGGAGAGTTGAGTTGGCTAGAAAGGGGTTTGATCGCGTGAAAGAGAAGAATGTTAAGTCATGGACCGCTATGGTTGCTGGCTATGGAATGCATGGTTGCGCAAAAGATGCTTTGGAAGTCTTCTACAAGATGATAAGGTCTGGAGTCAAACCGAACTACATCACTTTTGTGTCAGTTTTGGCTGCTTGCAGCCATGCTGGTCTGTTGGAAGAAGGATGGAATTGGTTTAATAGAATGAATCACGAATTTAATGTTGAGCCTGGAATTGAGCATTATTCGTGCATGGTTGATCTTCTTGGCCGTGCTGGTTATCTTAATGAGGCTTATGGATTGATCAAGAAAATGAAGGTGAGACCTGATTTTATAATATGGGGTTCCCTTCTTGGGGCTTGTAGGATTCACAAAAATGTGGAACTAGGGGAGATTTCTGCTAGAAAACTATTTGAGTTAGACCCAAGTAATTGTGGGTACTACGTACTACTCTCGAATATATATGCTGATGCTGGACGGTGGGATGATGTCGCGAGGATGAGAATATTGATGAAAAATCATGGATTGCTTAAAACACCTGGATTCAGCATAGTTGAACTTAAAGGTAGAATACATGTATTTTTAGTTGGTGATAAAGAGCATCCTCAACACGTTAAGATTTACGAGTATTTGGACAAATTAAATGTTAAGCTGCAAGGACTGGGCTATGTACCTAACGTAACATCAGTGCTTCATGACATTGATGATGAAGAAAAAGGAATGGTTCTAAGAGTTCACAGTGAGAAACTTGCTGTTGCCTTTGGAATCATGAATTCAGTTCCTTGTGCAACTATCCAGATCATAAAAAATCTTAGGATTTGTGGTGACTGCCATGCTGTAATTAAATTGATTTCCAAGGTGGAAAACCGAAAAATTATTGTCAGAGACTCAAAGCGATTTCATCATTTTAAGGATGGGTTCTGTTCTTGTGGGGACTATTGGTGA 2010 0.4378 MKTPLQSVFRTITIRAYSSPPPQPTKWTKNKNLTTMFHRYVDKTSVSSWNSIIADLARSGDSLEALRAFSSMRKLSLIPNRNTFPCAIKSCSSLFDLCAGKQTHQQAFVFGFESDLFVSSALIDMYSKCGHLEHARNLFDEIPQRNVVSWTSIIAGHVQNGCAAEGIRLFKELLVEESENVGCVQEEEEDRFVDPIVVSSVLSACSWVRQKRTTEGVHGFVIKRGFDGCLGVGNTLMDAYAKCGEMGVSRKVFDGMIEKDAYSWNSMIAEYAQNGLSAEAFNVFSDMVKSSKVSYNAVTLSAVLLACANSGALQVGKCIHGQVIKMDLEDNVFVGTSVVDMYCKCGRVELARKGFDRVKEKNVKSWTAMVAGYGMHGCAKDALEVFYKMIRSGVKPNYITFVSVLAACSHAGLLEEGWNWFNRMNHEFNVEPGIEHYSCMVDLLGRAGYLNEAYGLIKKMKVRPDFIIWGSLLGACRIHKNVELGEISARKLFELDPSNCGYYVLLSNIYADAGRWDDVARMRILMKNHGLLKTPGFSIVELKGRIHVFLVGDKEHPQHVKIYEYLDKLNVKLQGLGYVPNVTSVLHDIDDEEKGMVLRVHSEKLAVAFGIMNSVPCATIQIIKNLRICGDCHAVIKLISKVENRKIIVRDSKRFHHFKDGFCSCGDYW* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2491 669 Gene3D Tetratricopeptide repeat domain 428 538 IPR011990 GO:0005515
Amo06g2491 669 Gene3D Tetratricopeptide repeat domain 314 427 IPR011990 GO:0005515
Amo06g2491 669 Pfam PPR repeat family 361 408 IPR002885 -
Amo06g2491 669 Pfam PPR repeat family 259 308 IPR002885 -
Amo06g2491 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Amo06g2491 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Amo06g2491 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Amo06g2491 669 Pfam PPR repeat 436 462 IPR002885 -
Amo06g2491 669 Pfam PPR repeat 148 174 IPR002885 -
Amo06g2491 669 Pfam PPR repeat 48 75 IPR002885 -
Amo06g2491 669 Pfam PPR repeat 120 147 IPR002885 -
Amo06g2491 669 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Amo06g2491 669 TIGRFAM PPR: pentatricopeptide repeat domain 234 260 IPR002885 -
Amo06g2491 669 TIGRFAM PPR: pentatricopeptide repeat domain 365 397 IPR002885 -
Amo06g2491 669 TIGRFAM PPR: pentatricopeptide repeat domain 262 294 IPR002885 -
Amo06g2491 669 Pfam E motif 479 541 IPR046848 -
Amo06g2491 669 PANTHER BNAA09G52240D PROTEIN 34 182 - -
Amo06g2491 669 PANTHER BNAA09G52240D PROTEIN 263 555 - -
Amo06g2491 669 PANTHER BNAA09G52240D PROTEIN 189 290 - -
Amo06g2491 669 Pfam DYW family of nucleic acid deaminases 577 669 IPR032867 GO:0008270
Amo06g2491 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Amo06g2491 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 189 290 - -
Amo06g2491 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 263 555 - -
Amo06g2491 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 182 - -
Amo06g2491 669 Gene3D Tetratricopeptide repeat domain 46 185 IPR011990 GO:0005515
Amo06g2491 669 Gene3D Tetratricopeptide repeat domain 186 313 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2491 Amo-Chr6 87470889 87473358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2491 27 669 Glycoside Hydrolase AT3G49170 37.920 5.33e-155 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2491 - - lang:109338154 1093.18