Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2437 ATGTGTGAAGCAGAAACTAAAATGGCCATGCCTCTTTCTAACACACCATCAAAACCCACAACCCAACCTCAATTTGTTCCATACACTCCTGAAAACCCATCTCGACCCACCCAAGAACAGGGCTCAAGAACACGAGATTACTCAACGTGCTTCAATTGTGGCAAGAAAGGTCACTGGTACAGACAATGTCCTCTTGCTCTTCACAGTAACGGTTCCTCTCCGATCCCCGATAACATATATTGCCGCTGTGGGTACGGATTCTGCTTGGTGAAGACTTCAAAGTCTACTAAGAACTTCGGAAAGAAGTTCTATGTTTGCCCAATCAAAGAGGGGAAACAGTGTAAAGGGTTTATTGGATTCTGTAATGAACCACCTAGGGATGAAGAATACTTTCATCCTCCGCCGTATAAGTACCCTGTTTGTGAGTGCGGTGCAGGGGTTTGTGCAAAAGAGAGGGACCCCAATGCTGATAGAAAGTTCCGTTTTATTTGTCCTGTTCAACCGGGACATGGAAACTGTGGATTCATTGTGACAGAGGATGAACTGCGTGGTAAGCAGCGAATTACGGGCTTGAGTGGGAGTGGTGAATTACTTGTCGATCATCCGGAAAGCATGACAGCGATGGACATTTCGGAGGCTCCCTCCTTGAACGCCATACCTGAGGTTCCACTGGGTGATGACACATCTCCAAAGGCAACCCCTCCAAGACAAGTTGGTTTAAACGAATTTGAGGTTATTGATGATGATCTTGATGCGGAAGATGTGAACTGGGATGACTTTGACAAGGAAGCGGAGTCATTCCGGTCAAGATTTGCAACAGGGCTAACTTGCCGACAAAATCTATTCGGCAACAACAGTTTCAATGATGCTATTGGTGATAATGCACCTCCAACAGGCACTTTCACATCCTATGATGAGATCTCTGATTCTGAACACCCAACTGCCGGCGATAGTCCTCCTGAATGCAATCAGTCTACCRTCACTAGCCTTAATGAAGAYGCACAACTTTCTTCAAGAGGTAGCGATACTACGGTTTTGGGTCAGATTTCCGGAGATGATGTTATGCAAACTGAGGTTCCTGGAGGTGTTAGTGCTATGCTAACAGTGACACAAGGCACCAAACGGAAGCTAATGTCGGAGGCCGAAAGAAGAAAGAAAATGGTGTCATATATGCTTCGTGAGTTTCTCACAGAACTCGAGGACCTGGATATTCATGATCATGACTCTATTAGAGTAGCGGTGGATGGCTGTTTTAAGATATTGCAGGAGCTTGTTCTTACTGCTGACTATAAGCTCTTTTCTGACCATGTTTGGGACTATATCAATAATGTTTCAGCCATAGCAGAAATCGACAAGTCCATGGAGAATCGCCTCACTCTGGGCGAATCCAATCGAATTATCGAAGAGGAGAAAATGAAGCTGGCACAGATCCAGGAAGAAACTGTCGAGACCGAGGCCATGTTCATAGCATGTAACTTGAAAGGGAAAACGCTTCGTGAAGAAGTCTTGCGTATGAAGGCCGAGCTCCACGAGAAGCAGAACCAACTGAAATCTTGTGAACTGGAGAGCGCGACGATCGAGTCTCGTCTTGGTGACTTAAAGAGAAGAAGGCTGGAAGCTGACACAAAATTGATGGGCAGAGTTGAGGAAGCTGAATCCGCAAGGAGACTCAATGAGGAGAGACAACTGAAGCAAATGGCAGCTATGGCAGCTCTGGAGAAGCTAAAGCATCAATTACAAAACTGA 1746 0.457 MCEAETKMAMPLSNTPSKPTTQPQFVPYTPENPSRPTQEQGSRTRDYSTCFNCGKKGHWYRQCPLALHSNGSSPIPDNIYCRCGYGFCLVKTSKSTKNFGKKFYVCPIKEGKQCKGFIGFCNEPPRDEEYFHPPPYKYPVCECGAGVCAKERDPNADRKFRFICPVQPGHGNCGFIVTEDELRGKQRITGLSGSGELLVDHPESMTAMDISEAPSLNAIPEVPLGDDTSPKATPPRQVGLNEFEVIDDDLDAEDVNWDDFDKEAESFRSRFATGLTCRQNLFGNNSFNDAIGDNAPPTGTFTSYDEISDSEHPTAGDSPPECNQSTXTSLNEDAQLSSRGSDTTVLGQISGDDVMQTEVPGGVSAMLTVTQGTKRKLMSEAERRKKMVSYMLREFLTELEDLDIHDHDSIRVAVDGCFKILQELVLTADYKLFSDHVWDYINNVSAIAEIDKSMENRLTLGESNRIIEEEKMKLAQIQEETVETEAMFIACNLKGKTLREEVLRMKAELHEKQNQLKSCELESATIESRLGDLKRRRLEADTKLMGRVEEAESARRLNEERQLKQMAAMAALEKLKHQLQN* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2437 581 ProSiteProfiles Zinc finger CCHC-type profile. 50 64 IPR001878 GO:0003676|GO:0008270
Amo06g2437 581 Pfam GRF zinc finger 80 117 IPR010666 GO:0008270
Amo06g2437 581 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 20 148 - -
Amo06g2437 581 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 139 558 - -
Amo06g2437 581 SUPERFAMILY Retrovirus zinc finger-like domains 29 67 IPR036875 GO:0003676|GO:0008270
Amo06g2437 581 Coils Coil 495 529 - -
Amo06g2437 581 MobiDBLite consensus disorder prediction 1 43 - -
Amo06g2437 581 MobiDBLite consensus disorder prediction 213 236 - -
Amo06g2437 581 MobiDBLite consensus disorder prediction 285 357 - -
Amo06g2437 581 Gene3D - 30 74 - -
Amo06g2437 581 Pfam Zinc knuckle 49 64 IPR001878 GO:0003676|GO:0008270
Amo06g2437 581 Coils Coil 460 487 - -
Amo06g2437 581 SMART c2hcfinal6 49 65 IPR001878 GO:0003676|GO:0008270
Amo06g2437 581 MobiDBLite consensus disorder prediction 10 43 - -
Amo06g2437 581 PANTHER OS07G0190500 PROTEIN 20 148 - -
Amo06g2437 581 PANTHER OS07G0190500 PROTEIN 139 558 - -
Amo06g2437 581 MobiDBLite consensus disorder prediction 317 351 - -
Amo06g2437 581 MobiDBLite consensus disorder prediction 285 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2437 Amo-Chr6 85872713 85876168 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2437 - - aip:107647323 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3053 16 132608897 132609580 Amo06g2437 06 85872713 85876168 hybridization