Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2387 ATGGGTTATTATTCTATGTGGAGTGTTTGTTGTGTGATATTGGGATGGTTTGTTTCAGTTGGAATATGCGGCACACCAAGGAGACCCATGGCGGTTCCATTTGGAAGAAACTATGTTCCAACTTGGGCTTATGATCACATCAAATATTTGAATTCTGGTTATGATGCTCAGCTTCTTCTTGACAAGTACACTGGTACTGGGTTCCAATCCAAAGGTTCATACTTGTTTGGTCACTTCAGCATGGATATAAAGATGGTTGCTGGAGATTCTGCTGGAACAGTAACTGCTTTCTACTTATCTTCCCTAGGGACAGAGCATGATGAGATAGACTTTGAGTTCTTAGGTAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTATTCACCGGTGGCAAAGGCGATAGAGAACAAAGAATCTATCTCTGGTTTGATCCTACCAAAGAATACCACAGATATTCAGTTCTATGGAACTTGTATCAAATTGTATTCTTTGTGGACAACATCCCAATTAGGGTGTTCAAGAACAACAAGCGCATGGGTGTGAAATTCCCATTTAACCAACCAATGAAGATCTACAACAGCCTATGGAACGCAGATGATTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCGAAAGCACCATTCATAGCTTCCTACAAAGGCTTCCACATTGATGGCTGTGAAACCTCCGTTGAAGCCAAGTTCTGTTCCACTCAAGGTAAGAGATGGTGGGACCAACAAGAATTCAGAGACCTTGATTCTTATCAATGGAGGAGGCTTAGATGGGTCAGAAGGAGATTCACCATTTATAATTATTGCAGTGATAGAACAAGGTACCCTCAGATGCCACCTGAATGCAGAACAAACGGTGACTATTGA 888 0.4178 MGYYSMWSVCCVILGWFVSVGICGTPRRPMAVPFGRNYVPTWAYDHIKYLNSGYDAQLLLDKYTGTGFQSKGSYLFGHFSMDIKMVAGDSAGTVTAFYLSSLGTEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSVLWNLYQIVFFVDNIPIRVFKNNKRMGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCETSVEAKFCSTQGKRWWDQQEFRDLDSYQWRRLRWVRRRFTIYNYCSDRTRYPQMPPECRTNGDY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2387 295 Gene3D - 21 295 - -
Amo06g2387 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Amo06g2387 295 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Amo06g2387 295 CDD GH16_XET 31 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo06g2387 295 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo06g2387 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 32 222 IPR000757 GO:0004553|GO:0005975
Amo06g2387 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 291 - -
Amo06g2387 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 291 IPR044791 GO:0004553
Amo06g2387 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo06g2387 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 292 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2387 Amo-Chr6 84456128 84461657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2387 8 294 Glycoside Hydrolase AT5G13870 75.610 5.09e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2387 K08235 - gmx:547775 510.375