Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2386 ATGGCTTCGGCTACACTTTCTGTAGCCAAACCAGCTCTTCAGGGAAATGGTGGGAAGGGGTTCTCTGAATTCTCTGGCCTCCGCAACTCATCATCTAGCTACCTTCCTTTCTCTAGGAAGACTTCAGATGACTTCCACTCTATCATTTCATTCCAGACATCTGCAGTTGGAAGCAGTGGAGGATACAGGAAAGGTGTGACGGAAGCGAAGTTGAAGGTGGCCATAAACGGTTTTGGCAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGCCGCAAAGACTCTCCTCTGGATGTCATTGCCATCAATGACACCGGAGGCGTCAAGCAGGCCTCTCACCTTCTCAAGTATGACTCCACCCTTGGCATATTCGACGCCGACGTTAAGCCTGTCGGTGACGATGCCATCTCCGTTGACGGAAAGGTCATCAAAGTTGTCTCCAACCGCAACCCTGCTAACCTTCCCTGGAAGGAATTGGGAGTTGACTTGGTGATTGAAGGAACTGGGGTGTTCGTGGACAGAGAAGGTGCAGGGAAGCACATTCAGGCGGGAGCSAAGAAGGTWCTGATCACAGCCCCAGGCAAAGGTGACATCCCAACCTATGTAGTTGGTGTCAATGCTGATGCTTACAGCSCAGACGAACCCATCATCAGCAACGCTTCTTGCACCACTAACTGCCTTGCTCCCTTCGTCAAGGTCCTTGACCAGAAATTCGGTATCATCAAGGGAACCATGACCACCACTCACTCCTACACCGGAGACCAAAGGCTTCTTGACGCCAGCCACCGCGACCTCAGGCGCGCGAGGGCGGCAGCGCTGAACATCGTGCCGACCTCAACCGGAGCGGCCAAGGCGGTGGCGCTTGTGTTGCCGACACTTAAGGGGAAGCTGAACGGAATTGCATTGCGTGTGCCAACGCCAAACGTGTCCGTCGTTGACCTCGTTGTTCAGGTGTCAAAGAAGACGTTCGCGGAGGAAGTCAACGCTGCGTTCAGAGAGAGCGCGGAGAAGGAGCTTAACGGCATCCTCTCAGTGTGTGATGAACCACTTGTCTCCGTTGATTTCAGGTGCACCGACGTTTCATCTACCGTTGACTCTTCGTTGACCATGGTCATGGGTGATGACATGGTGAAGGTTATTGCATGGTATGATAATGAGTGGGGTTACTCACAAAGGGTTGTGGATTTGGCTGACATTGTTGCAAACAGCTGGAAGTGA 1218 0.5246 MASATLSVAKPALQGNGGKGFSEFSGLRNSSSSYLPFSRKTSDDFHSIISFQTSAVGSSGGYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDDAISVDGKVIKVVSNRNPANLPWKELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYSXDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAEKELNGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANSWK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2386 405 Gene3D - 72 397 - -
Amo06g2386 405 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 405 IPR020831 GO:0016620
Amo06g2386 405 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 220 227 IPR020830 GO:0016620
Amo06g2386 405 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 72 173 IPR020828 GO:0051287
Amo06g2386 405 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 70 238 IPR036291 -
Amo06g2386 405 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPA2, CHLOROPLASTIC 1 405 - -
Amo06g2386 405 SMART gp_dh_n_7 71 222 IPR020828 GO:0051287
Amo06g2386 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 180 193 IPR020831 GO:0016620
Amo06g2386 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 243 259 IPR020831 GO:0016620
Amo06g2386 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 339 354 IPR020831 GO:0016620
Amo06g2386 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 216 234 IPR020831 GO:0016620
Amo06g2386 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 299 316 IPR020831 GO:0016620
Amo06g2386 405 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 222 384 - -
Amo06g2386 405 Gene3D Dihydrodipicolinate Reductase; domain 2 221 385 - -
Amo06g2386 405 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 72 395 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Amo06g2386 405 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 227 383 IPR020829 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2386 Amo-Chr6 84428432 84431215 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2386 K05298 - tcc:18601182 703.36