Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2047 ATGAAAGCTTTCGTGTCAACCAATGATGCCGCCGTATTGGACACTGACAGAGCAACAACAGTTGATCTAATGAAGTTTATGCTTAGTTATGCAAGTAACCCATTGGTTACATCTGAAAGCAATAATCTATCTAACAGAGATATTGTTGAATCATCTGTGAGAAATCTGTTTGGTGAACTTTACAAGCTGAGTTACAGTGCACCTGGGCCCAACTCTTCCGATTCGGTGCAAAATCAAATATCTAGTGGATATGGACAGACAATGCCTCCTGGTCGAAACATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTCGCAAGAAATGTTAAATGCCGCGAGTGTGAGGAAGCAAGGCCAAAAAGACAATTGACAGGAGGAGAATGGGAATGTCCTCAGTGCGATTTCTATAATTATGGGAGGAATATGACTTGCTTAAGGTGTGATTGCAAGCGACCGGGACAGATATCTTTGGGTCCTGCCAATACCCTGTCAAATATGGGGTATGGAAATGGAGACAATACTAATACTTCAGAGATTGATAGTAGACTAGCTGCTAATGAAGAGAAAGCACGGCGTTGGTTTAGTAAGGTTTCTCAACTAGACAGCAGTGCGGATATTGACAGCTTGATTGGGGATGAAGATTTTCCCGAGATAATGCCATTAAGGAAAGGAGTAAATAGATTTGTTGTGAGCACAAGGAAAACTCCGTTGGAGAGGAGATTGGCTGACGCTCGATACAGGAGAAACTTGGACAATAATGGCATTCCCAGGGTTGAGGATTTTAAAGCTGAGGAATCAACCAGGATAAATGATCCTCCATTTTCTTCAGATCTGGCTGCCCAAAAAATTGAGAACATGACAACAGAAAAGAGCGAAACTGATGCTCAGTATGCAGGTACTAGTTCAGGTAACAATTCACAACTTTCTAATAATTCTACAAACCAAAATGGCATCATAGATAAGGAGAAAGATCAAGCTGAAAAATCTGAGCGGTGGTTTAGAAAGGTTGCTGAGTTGCATGATATTTCAGATTCATCAAGCAGGGTATCTGATGAGGACTTCCCTGAAGTAATGCCTATGCGCACAGGAGAAAACCGATTTGTTGTTAGCAAGAAAAAGGATCGATCTTTGACTTCACCTGCGTACAAGAGACGATTGGCCATGGAACAATCTGGCAACAATACCAACTTTGTCCCCTTTGTTCCCTTCCCTCCAGATTACTTTGCCAAAAAGGACAAGCAACCGGAAAATGGAGTAGATTCAGTAGATATTTCTTCGAATGCTGAATCATCTTCAATATCTGAAGCGGCAGAGAATCTTCCAAAGATGCCAGATGATGCTAGAGCTAGAGCTGAGTTACGAGGCGCAAACTATTCCCCAGGTATGACCAATGCTGAAACAATGTCTGGGGTTCCAGAGATCTTCCATAATGCTACATTTGGCCGGGAAAGAAAAGAAAATGTCAGAGAGATTAGAAGACAAGATGAAAACATGAAGAACTGTAGTCCAGAACCTTCCAGACAGCACTCGACTAAAAATGATATTGGTTCCATTTCTGGGGCATTAACTAGTGGAAATTCCAGTTTCAATCAAGAGAATTCCGGGAACAAGAACAGCAATCAAGAGCCAAATTTGACAGGCAGTTTGGAAAACCAGAATAACAGAACACAGTGGACAGGAAAGAGTTTGGAGGGGTCAGCTGTCAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGTCGTGTCGCACAGATCAAGGATATCTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCGATAATGCCTATGCGTAAAGGCGTGAATAGATTTGTTGTGAGCAAGAGGAAAACGCCGTTGGAAAGGAGATCGACATCTCAGCAGTACCGAAGAAACCTTCCTGTTGTGAGTTCAGATCCTCTTAAAAAGGAAAATGAAGGTAGCTGA 1989 0.4233 MKAFVSTNDAAVLDTDRATTVDLMKFMLSYASNPLVTSESNNLSNRDIVESSVRNLFGELYKLSYSAPGPNSSDSVQNQISSGYGQTMPPGRNIEMKRGDWICPRCNFMNFARNVKCRECEEARPKRQLTGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGPANTLSNMGYGNGDNTNTSEIDSRLAANEEKARRWFSKVSQLDSSADIDSLIGDEDFPEIMPLRKGVNRFVVSTRKTPLERRLADARYRRNLDNNGIPRVEDFKAEESTRINDPPFSSDLAAQKIENMTTEKSETDAQYAGTSSGNNSQLSNNSTNQNGIIDKEKDQAEKSERWFRKVAELHDISDSSSRVSDEDFPEVMPMRTGENRFVVSKKKDRSLTSPAYKRRLAMEQSGNNTNFVPFVPFPPDYFAKKDKQPENGVDSVDISSNAESSSISEAAENLPKMPDDARARAELRGANYSPGMTNAETMSGVPEIFHNATFGRERKENVREIRRQDENMKNCSPEPSRQHSTKNDIGSISGALTSGNSSFNQENSGNKNSNQEPNLTGSLENQNNRTQWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRSTSQQYRRNLPVVSSDPLKKENEGS* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2047 662 MobiDBLite consensus disorder prediction 425 443 - -
Amo06g2047 662 SUPERFAMILY Ran binding protein zinc finger-like 91 126 IPR036443 -
Amo06g2047 662 MobiDBLite consensus disorder prediction 415 451 - -
Amo06g2047 662 Gene3D - 128 160 - -
Amo06g2047 662 Gene3D - 90 127 - -
Amo06g2047 662 MobiDBLite consensus disorder prediction 630 662 - -
Amo06g2047 662 MobiDBLite consensus disorder prediction 509 569 - -
Amo06g2047 662 ProSitePatterns Zinc finger RanBP2-type signature. 101 120 IPR001876 -
Amo06g2047 662 MobiDBLite consensus disorder prediction 482 585 - -
Amo06g2047 662 MobiDBLite consensus disorder prediction 263 282 - -
Amo06g2047 662 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 1 661 - -
Amo06g2047 662 ProSiteProfiles Zinc finger RanBP2 type profile. 97 126 IPR001876 -
Amo06g2047 662 ProSiteProfiles Zinc finger RanBP2 type profile. 130 159 IPR001876 -
Amo06g2047 662 MobiDBLite consensus disorder prediction 292 331 - -
Amo06g2047 662 PANTHER ZINC FINGER PROTEIN 1 661 - -
Amo06g2047 662 ProSitePatterns Zinc finger RanBP2-type signature. 134 153 IPR001876 -
Amo06g2047 662 SMART zf_4 132 156 IPR001876 -
Amo06g2047 662 SMART zf_4 99 123 IPR001876 -
Amo06g2047 662 MobiDBLite consensus disorder prediction 292 325 - -
Amo06g2047 662 Pfam Zn-finger in Ran binding protein and others 132 158 IPR001876 -
Amo06g2047 662 Pfam Zn-finger in Ran binding protein and others 98 124 IPR001876 -
Amo06g2047 662 MobiDBLite consensus disorder prediction 484 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2047 Amo-Chr6 74413549 74417242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2047 2 163 EF-hand Containing Proteins AT1G55040 43.787 2.83e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2047 - - aip:107604755 1278.46