Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1795 ATGGCTCCAGTTGCTAAAAGGTTAGAGGGTAAGGTGGCAATAATCACAGGAGGTGCCGGGGCCATTGGTGCAACCACCGCAAAACTATTCCTTCCACACGGAGCTAAGGTGATCATCGCAGATGTCCAAGACGAACTGGGTATCTCTCTCTGCAAATCCCTCATCACCAAAGACGGTGCCGCTAATAACAACAACAACATCGACTACGTTCACTGTGACGTGACCTCCGAACAAGACGTCAAAAACGCGGTCGATTTGGCTGTTTCCAAATACGGCCACATTGACATCATGTATAACAATGCCGGCACCGCCGGTGACAATATCAAGCGCCCGATGGAGAACTCCACCGTCGAAGACTTCAAGAGAATCTTCGATGTCAACGTCTTAGGGGCTTTCTTGGGCGCCAAGCATGCCGCGAGGGTCATGGTGAAGGCACAGAGGGGAGGCGTTATCCTCTTCACGACGAGCATTACTTCTGTGATCGGAGGCCAGGCAAAACCGGCTTACAGCGCATCCAAGCACGCCTTGGTGGGGCTGATGAAAGATCTGTGCGTGGAACTTGGTCAGCATGGGATTAGAGCGAATTGCATTGCTCCGGGGGGGATTGCGACGCCAATGCTGAACGGTTGGTTGAAGATGGAGAGGGAGGGGACAGAGGAGATCCTGCAGTCGGTGGGGGTGCTGAAAGGTGGAGTGGTTAAGGAGGAGGACGTGGCAGAGGCGGCGGTTTATTTGAGCAGCGACGAGGGGAGGTTCATAAGTGGAGTTAACCTTGTGTTGGATGGGGGTTATAGCTCAACCAATGGCTCATTCGCTATGATAGCGAACGTTCTCAAAAACATCCAAACCACCAATTTCATTGATGCCTAA 870 0.523 MAPVAKRLEGKVAIITGGAGAIGATTAKLFLPHGAKVIIADVQDELGISLCKSLITKDGAANNNNNIDYVHCDVTSEQDVKNAVDLAVSKYGHIDIMYNNAGTAGDNIKRPMENSTVEDFKRIFDVNVLGAFLGAKHAARVMVKAQRGGVILFTTSITSVIGGQAKPAYSASKHALVGLMKDLCVELGQHGIRANCIAPGGIATPMLNGWLKMEREGTEEILQSVGVLKGGVVKEEDVAEAAVYLSSDEGRFISGVNLVLDGGYSSTNGSFAMIANVLKNIQTTNFIDA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1795 289 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 2 274 - -
Amo06g1795 289 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Amo06g1795 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Amo06g1795 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Amo06g1795 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Amo06g1795 289 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 2 274 - -
Amo06g1795 289 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 265 IPR036291 -
Amo06g1795 289 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Amo06g1795 289 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Amo06g1795 289 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Amo06g1795 289 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Amo06g1795 289 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Amo06g1795 289 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Amo06g1795 289 Gene3D - 3 285 - -
Amo06g1795 289 Pfam Enoyl-(Acyl carrier protein) reductase 19 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1795 Amo-Chr6 63459740 63461303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1795 8 263 Acyl Lipid Metabolism Gene Families AT1G63380 28.571 2.03e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1795 - - aprc:113863381 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2488 16 105636459 105637969 Amo06g1795 06 63459740 63461303 hybridization