Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1758 ATGGATTCAATTGAAGTAGAGTTGAGCATTGAAAGCCAATCAGATAAAATGCAAGCAGAGGGCGTTCACAGCTACGTTGCAGAGTGGCCAATTTCCTGTCTAGCATGGTCAGTCCGCCGTGATAAAGCCCCGCGCCTGGCCATAGGCAGCTACTTGGAAGACTACACCAACAAAGTCGAACTCATTCACTTCAACTACCACACCTTCAACTTCACCACCGATCCTCGTTTGGTGCTGGACCACCCATACGCCCCAACCAACCTCATGTTCTTCCCCTCCGACAACGACACCAACCCCGACCTCCTCGCCACTTCCGGCGACAACCTCAGACTCTGGCAAATTCACCACGACCACATTCAACTCAAGTCCCTCTTAATTGGTAACAAAGTCAGTGACCACTCTGCAATAACGTCGTTTGACTGGGCAGGGTTTGATCCTCGTCTTGTGGCCACTTCTAGCGTCGACACCACGTGCACCATTTGGGACATTGAAAGGGAATCCATGAATGCGCAGCTTGTGGCGCACGATAAAGAGGTGTATGATATTTCATGGGGTGGGCTTAACGTCTTTGCTTCTGTCTCTGGTGATGGTTCTGTTAGGGTGTTTGATCTGAGAGACAAGGAGAAATCGACCATCATTTATGAGAATCCGGTTCAAGATTGTCCCTTGTTGCGTCTCGAATGGAACAAAGGGGATCCCAGGTTTATGGCGACGGTTGGAATGAACAGCAGTAAGGTGGTGGTTATGGATATTAGGCAACCAACAACGCCTTTTATGGAGTTAAGTAAGCATAGGATGAGTGTTAATGGTGTATCGTGGTCCCCGGATATCGGACGACATTTGTGCTCTGTAGGTGATGATTCAACGGCCTTGATTTGGGAGGTGATGGAAACGGGGGTTCAAGGTGGTTGTGGTGATGTAGAGCCTTTGATGTGGTATGGATCAACGGCTGAGATCAATCACGTGTGTTGGTCTCCTATGCAGTGGGACTGGATTGCACTTACACTCTTAAATAATTTGCAACTACTCAAGGTGTAG 1038 0.4865 MDSIEVELSIESQSDKMQAEGVHSYVAEWPISCLAWSVRRDKAPRLAIGSYLEDYTNKVELIHFNYHTFNFTTDPRLVLDHPYAPTNLMFFPSDNDTNPDLLATSGDNLRLWQIHHDHIQLKSLLIGNKVSDHSAITSFDWAGFDPRLVATSSVDTTCTIWDIERESMNAQLVAHDKEVYDISWGGLNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKGDPRFMATVGMNSSKVVVMDIRQPTTPFMELSKHRMSVNGVSWSPDIGRHLCSVGDDSTALIWEVMETGVQGGCGDVEPLMWYGSTAEINHVCWSPMQWDWIALTLLNNLQLLKV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1758 345 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 14 345 - -
Amo06g1758 345 PANTHER WD REPEAT CONTAINING PROTEIN 14 345 IPR045159 -
Amo06g1758 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 212 IPR001680 GO:0005515
Amo06g1758 345 Pfam WD domain, G-beta repeat 131 162 IPR001680 GO:0005515
Amo06g1758 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 295 - -
Amo06g1758 345 SMART WD40_4 165 203 IPR001680 GO:0005515
Amo06g1758 345 SMART WD40_4 254 294 IPR001680 GO:0005515
Amo06g1758 345 SMART WD40_4 123 162 IPR001680 GO:0005515
Amo06g1758 345 SMART WD40_4 72 113 IPR001680 GO:0005515
Amo06g1758 345 SUPERFAMILY WD40 repeat-like 30 338 IPR036322 GO:0005515
Amo06g1758 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 295 IPR001680 GO:0005515
Amo06g1758 345 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Amo06g1758 345 Gene3D - 20 340 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1758 Amo-Chr6 60583291 60584328 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1758 K11805 - rcu:8269731 479.174