Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1445 ATGGTGAAGGCCTACCTCCGTTACGAGCCGGCGGCATCGTTCGGCGTCATCGCCTCCGTCGAGTCCAACATAGCCTATGACAGCTCCGGCAAGCACCTCCTCTCTCCGGCGCTCGAGAAGGTCGGCGTCTGGCACGTCCGTCCAGGCATCTGCACCAAAACCCTAACCCCTTCCCCTGACTCTCGAGTTTCCTCCCTCGCCGTCACCTCCATCGCCCCTGCCCCTTCTTCCTCCCAGGTAGCGGTTGGTTATGCTGATGGTAGCATAAGGATTTGGGACTCTGATGCGGGAACTTGTGAGACCACGCTGAGTGGGCACAAGGGAGCCGTCACTGCTCTTCTTTACAACAAGGCTGCTTCGGTGCTTGCTTCCGGGAGCAAGGACAATGATATCATTTTGTGGGATGTTGTTGGTGAGACCGGCATGTTTCGCCTCCGCGGGCATCGTGACCAGGTGACTGATGTAGTATTTGTGGGGTCTGGGAAAAAGCTAGTTAGTTCCTCGAAAGACAAGTTCTTGAGAGTGTGGGATCTAGATAGCGAGTATTGTATACAAATTGTTGGTGGTCATCATAGTGAAATTTGGTCTATAGATGTTGATCCTGAGGAAAGGTATCTGGTCACTGGTTCTGCAGACAAGGTGCTCCGGTTTTATTCAATCAAGCATGAGTCTGTGGATGGACAATCTGTAAATGCGGACAGTGCAGTGGTTGGTGATGGAGGCTCTTCTGTTCAAAACAAATGGGAAGTTTTGAGGCAGTTTGGCGAGATTCAGCGGCAAAGCAAGGAGAGAGTGGCAACTGTGCAGTTCAGTAAGGCAGGGAAACTGCTAGCTTGTCAGGTTGCAGGAAAGACAGTTGAGATATACCGTATTCTGGATGAGGCTGAGGCGAAGAAGAAGGCAAGACGTCGGGTTCACCGCAGGAAAGAGAAGAAACATGCCAAAGAGGCTTTGGGGGGAACTGAAAATGGAGAAGTGAATAAAGGGGTTAAAGGAGATATAACTTCCGAGACTCAAGGGCTCATAGAAACAAGTAACCCTGCAGTTACTGTGCCTGATGTTTTTAAGCTACTCCATACCCTTAGAGCTAGCAAAAAGATATGCTCCATATCTTTTTGTCCAGTCACTCCTAAGAATTCACTGGCTAGTTTAGCATTGTCCTTGAACAATAATCTACTTGAGTTTTACTCCATTGAAAGCAGTGAAGCAACAAAAACACTTGCTATTGAGCTACAAGGACACCGTTCTGATGTTAGAAGTGTCACACTTAGTTCGGACAACAGTCTTTTGATGTCAACTAGTCACAATGCAGTTAAGATTTGGAACCCTAGCACTGGGTCATGCCTAAGGACAATCGATTCTGGGTATGGACTGTGCAGTTTAATTCTGCCCTCTAACAAGTATGGGCTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGCACTCGTTTAGAAGCAGTGGAAGCTCATGGTGCTTCTGTCCGTTCAATTGCTCTCCTGCCAGATAAAAATGGTTTTGTCACAGGAAGTGCTGATCATGACGTTAAGTTTTGGGAGTACCAGTTGAAGCAAAGCCCCGGTCAAGCTACTAAGCAACTTAGTGTGTCAAACGTCAGTACAATGAAGATGAATGATGATGTTCTTGTTGTTGCAATAAGTCCCGATTCTAAATATATTGCTGTGGCGCTGTTAGATGGTACTGTGAAGGTTCACTTCGCAGACACGTTCAAATTTTTCCTTTCATTATATGGCCATAAGCTGCCTGTTCTTTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGATCAGCAGACAAAAATTTGAAGATTTGGGGTCTGGATTTTGGTGATTGTCATAAATCCATTTTTGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCGAAGACACACTATGTGTTTAGTGTTGGGAAAGATCGGCTGATAAAATATTGGGATGCTGATAAATTTGAATTGCTGTTGACTCTCGAAGGACATCATGCAGATGTCTGGTGTCTTGCAATAAGTAATCGTGGTGATTTCGTGGTCACTGGATCTCATGACCGATCAATCCGCCGATGGGATCGTACAGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCTTTTGAAAACAAGTATGCACCAAAGGAAGAAGTACCGGAGGAGGGTGCTGTGGCTTTAGCTGGGAAAAAAACCCAGGAGACCCTTACTGCCAGTGACTTAATTATCGAGAGATTAGACATAGCAGAAGCTGAGAAAAAGCGTATTGCAGAACATGAGGAGGAGAAAAATAATAAAAATGCTGCTGCATTCCAAGCAAATCCGCTTATGAATGGCCTTTCCCCTTCTGATTATGTTCTTAGTGCATTCTCAGATATTCACTCCAATGATCTTGAGCAAACATTATTGGCTTTACCCTTTTCTGATGCTTTGAAACTTCTGTCATACTTGAAGGATTGGACTTCATATTCAGATAAGGTTGAGCTTATTTGCCGGATAGGAACACTACTGCTGCAGACACATTATAATCAGCTGCTTACTACACCGGCTGCTAGACCTATTTTGACTGCTTTCAGCGACATTTTTTATGAACATGTCAAGGGATGGAAAGATATCTTTGGTTTTAACCTTGCAGCGATGGATCATATCCAGCAAATTCTGGCTACGAGATCAGATGCTATTTTCCGTGATGCAAGATCTAAACTACTAGAGATACATGCTAAACAATCGAAACATGTAGCAGAAAGTTACGACACTGGAGAAGGGAAGAGGAGGAAGAAGTAG 2850 0.4474 MVKAYLRYEPAASFGVIASVESNIAYDSSGKHLLSPALEKVGVWHVRPGICTKTLTPSPDSRVSSLAVTSIAPAPSSSQVAVGYADGSIRIWDSDAGTCETTLSGHKGAVTALLYNKAASVLASGSKDNDIILWDVVGETGMFRLRGHRDQVTDVVFVGSGKKLVSSSKDKFLRVWDLDSEYCIQIVGGHHSEIWSIDVDPEERYLVTGSADKVLRFYSIKHESVDGQSVNADSAVVGDGGSSVQNKWEVLRQFGEIQRQSKERVATVQFSKAGKLLACQVAGKTVEIYRILDEAEAKKKARRRVHRRKEKKHAKEALGGTENGEVNKGVKGDITSETQGLIETSNPAVTVPDVFKLLHTLRASKKICSISFCPVTPKNSLASLALSLNNNLLEFYSIESSEATKTLAIELQGHRSDVRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPSNKYGLVGTKDGTIEIIDIGSGTRLEAVEAHGASVRSIALLPDKNGFVTGSADHDVKFWEYQLKQSPGQATKQLSVSNVSTMKMNDDVLVVAISPDSKYIAVALLDGTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLIKYWDADKFELLLTLEGHHADVWCLAISNRGDFVVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKYAPKEEVPEEGAVALAGKKTQETLTASDLIIERLDIAEAEKKRIAEHEEEKNNKNAAAFQANPLMNGLSPSDYVLSAFSDIHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELICRIGTLLLQTHYNQLLTTPAARPILTAFSDIFYEHVKGWKDIFGFNLAAMDHIQQILATRSDAIFRDARSKLLEIHAKQSKHVAESYDTGEGKRRKK* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 670 IPR001680 GO:0005515
Amo06g1445 949 Gene3D - 349 454 IPR015943 GO:0005515
Amo06g1445 949 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 937 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 102 IPR001680 GO:0005515
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 621 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 136 - -
Amo06g1445 949 Coils Coil 768 791 - -
Amo06g1445 949 Gene3D - 60 315 IPR015943 GO:0005515
Amo06g1445 949 SMART WD40_4 445 482 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 580 619 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 138 177 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 180 219 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 622 661 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 404 442 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 539 577 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 485 524 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 664 703 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 247 290 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 96 135 IPR001680 GO:0005515
Amo06g1445 949 SMART WD40_4 48 93 IPR001680 GO:0005515
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 136 IPR001680 GO:0005515
Amo06g1445 949 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 937 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 451 IPR001680 GO:0005515
Amo06g1445 949 CDD WD40 24 290 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 221 IPR001680 GO:0005515
Amo06g1445 949 Coils Coil 292 312 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 524 IPR001680 GO:0005515
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 628 IPR001680 GO:0005515
Amo06g1445 949 ProSitePatterns Trp-Asp (WD) repeats signature. 164 178 IPR019775 -
Amo06g1445 949 Gene3D - 654 718 IPR015943 GO:0005515
Amo06g1445 949 MobiDBLite consensus disorder prediction 302 330 - -
Amo06g1445 949 Pfam Dip2/Utp12 Family 806 906 IPR007148 -
Amo06g1445 949 SUPERFAMILY WD40 repeat-like 365 705 IPR036322 GO:0005515
Amo06g1445 949 Gene3D - 455 653 IPR015943 GO:0005515
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 180 - -
Amo06g1445 949 Pfam WD domain, G-beta repeat 666 703 IPR001680 GO:0005515
Amo06g1445 949 Pfam WD domain, G-beta repeat 410 442 IPR001680 GO:0005515
Amo06g1445 949 Pfam WD domain, G-beta repeat 97 135 IPR001680 GO:0005515
Amo06g1445 949 Pfam WD domain, G-beta repeat 493 523 IPR001680 GO:0005515
Amo06g1445 949 Pfam WD domain, G-beta repeat 51 93 IPR001680 GO:0005515
Amo06g1445 949 Pfam WD domain, G-beta repeat 183 218 IPR001680 GO:0005515
Amo06g1445 949 Pfam WD domain, G-beta repeat 144 177 IPR001680 GO:0005515
Amo06g1445 949 Pfam WD domain, G-beta repeat 585 618 IPR001680 GO:0005515
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 221 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Amo06g1445 949 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Amo06g1445 949 PRINTS G protein beta WD-40 repeat signature 606 620 IPR020472 -
Amo06g1445 949 PRINTS G protein beta WD-40 repeat signature 122 136 IPR020472 -
Amo06g1445 949 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 524 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 703 IPR001680 GO:0005515
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 671 703 - -
Amo06g1445 949 SUPERFAMILY WD40 repeat-like 26 402 IPR036322 GO:0005515
Amo06g1445 949 CDD WD40 407 703 - -
Amo06g1445 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1445 Amo-Chr6 40424591 40431928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1445 584 712 Miscellaneous Gene Families AT5G08390 27.132 9.95e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1445 K14556 - gmx:100775810 1575.45