Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1052 TTAGACAAGGGGTGGAGCCGATCCACTTTGAGAGGGTTAGGTTTTTTCTTCTTCTTCGGAGAATTCATCGAATTTGGTGTTGAAGTTGAATTGGACCTGATAGGGTTTCCGGTCATCCATTACCGGAACGAAGCAGATTTCTATAACGAATCAACAATGCCTCGCTATGAAGATAAATACGGCAACACACGCCTCTATGTTGGTCGATTGGCTTCAAGGACGCGTTCCCGTGATCTGGAGCGAGTTTTCAGCCGATATGGAAGGCAGATCTGCTCTGATTTGTTTGTTGCCATAGGTCTCCCATGTTTGATTGTTTCTGGGGTTTTGCCTAAACCTGGAGGTCTGTGGTGGGAGGGTGGCCTTGGTGGAATTGGTGGAAATTCCTGCCGAGTGTTGACTGTGGCGATTCTTTCTGTAATGTTATTGCGTGTTTTAATGGAAATGGCAAGAATCACAAACTGGTGTTTATTAAGTAATGATGGCCTTACTGTTTCTGGAAACCATTTCCGCAGAGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTCAGCGATCCTAGAGATGCTGATGATGCAAGATACAACTTGGATGGCCGTGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCGAAAGGGGTTCCTCGCGGTTCCCGTGAATATTTGGGTCGTGGTCCTCCTCCTGGAACTGGGCGTTGCTTTAACTGTGGTATTGATGGCCACTGGGCCCGAGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTATCGATGTGGGGAGAGGGGTCATATAGAAAAAAACTGCAAGAACAGTCCCAAAAAGCTGAGTAGACGTGGGCGTAGTTATTCCCGCTCTCCTGTCAGGTCACGTTCCCCAGTCAGGTCACGCTCTCCTCGTCGTGGCAGAAGCAGGGACAGGAGTTACACCCCAGAACGTAGTTACAGTCGATCAAGATCCCCAGTTAGGGGGGATCGAAGCCCAGTTCGTGATAGATCAGAGAGCCCACGCTCTAGAAGCCCTGAACCCAAAGGTAGCCCTCAGCCCTCGAAGGCAAGGAAGCATAGTCCATCACCTGATGAAGGGAGTCCACAGAAGAGAGGTGATGCATCTCCTGGCAATGAGAGGATGGTTACACAGCAAGATGGATCTGATTACAGTGATGGCCCCAGAGCAAAGAGCAGAAGCCCCGCTAGTCCAGCAGGGGATGACAGCCCAAAGGCTAATGGTCGCAGCCGCAGTCCTAGTCCCAGAGATGATGACAGAAGCCCCATTGATGACGAAGAAGACAACCAGCGTAATCTACCAAGAGGCAGTGAGTCCCCTTGA 1335 0.4929 LDKGWSRSTLRGLGFFFFFGEFIEFGVEVELDLIGFPVIHYRNEADFYNESTMPRYEDKYGNTRLYVGRLASRTRSRDLERVFSRYGRQICSDLFVAIGLPCLIVSGVLPKPGGLWWEGGLGGIGGNSCRVLTVAILSVMLLRVLMEMARITNWCLLSNDGLTVSGNHFRRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSYSRSPVRSRSPVRSRSPRRGRSRDRSYTPERSYSRSRSPVRGDRSPVRDRSESPRSRSPEPKGSPQPSKARKHSPSPDEGSPQKRGDASPGNERMVTQQDGSDYSDGPRAKSRSPASPAGDDSPKANGRSRSPSPRDDDRSPIDDEEDNQRNLPRGSESP* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1052 444 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 168 427 - -
Amo06g1052 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 209 IPR000504 GO:0003723
Amo06g1052 444 SUPERFAMILY RNA-binding domain, RBD 169 235 IPR035979 GO:0003676
Amo06g1052 444 Gene3D - 47 222 IPR012677 -
Amo06g1052 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 216 IPR000504 GO:0003723
Amo06g1052 444 MobiDBLite consensus disorder prediction 415 437 - -
Amo06g1052 444 MobiDBLite consensus disorder prediction 269 444 - -
Amo06g1052 444 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 58 89 - -
Amo06g1052 444 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 58 89 - -
Amo06g1052 444 ProSiteProfiles Zinc finger CCHC-type profile. 257 273 IPR001878 GO:0003676|GO:0008270
Amo06g1052 444 SMART c2hcfinal6 235 251 IPR001878 GO:0003676|GO:0008270
Amo06g1052 444 SMART c2hcfinal6 257 273 IPR001878 GO:0003676|GO:0008270
Amo06g1052 444 Pfam Zinc knuckle 256 273 IPR001878 GO:0003676|GO:0008270
Amo06g1052 444 Pfam Zinc knuckle 235 250 IPR001878 GO:0003676|GO:0008270
Amo06g1052 444 ProSiteProfiles Zinc finger CCHC-type profile. 235 250 IPR001878 GO:0003676|GO:0008270
Amo06g1052 444 MobiDBLite consensus disorder prediction 305 341 - -
Amo06g1052 444 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 168 427 - -
Amo06g1052 444 Gene3D - 226 255 - -
Amo06g1052 444 Gene3D - 256 305 - -
Amo06g1052 444 SUPERFAMILY Retrovirus zinc finger-like domains 226 274 IPR036875 GO:0003676|GO:0008270
Amo06g1052 444 SMART rrm1_1 64 212 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1052 K12896 - gmx:100813237 357.451