Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1033 ATGAAGAAACAATTGACCGGTATCCGGGGTGATTCTCCCTTGCACTCAGCAATCCGAGCTGGAAACATGGAATTGGTGCTGGGAATCATCTCTGAGAATGGAGAGGAGGAACTGAAGGAGTTGCTCTCAAAGACAAATAACTCTGGTGAAACTGCCTTATATGTTGCTGCTGAAAATGATAATCTTGATATAGTGAAGGAATTGATCAAATATCATGATATTGGTTTGGCCGGCTTCAAAGCTAAGAACGGATTTGATGCATTCCACATTGCTGCTAAAAATGGGAACTTGGAGATATTGAAGGTCCTCATGGAAGCCTTTCCCGAAGTTTCAATGACAGTYGATATGTCAAACACTACTGCATTGCACACAGCTGCAGCACAAGGATATATTGAGGTAGTAAATTTTCTCTTTGAAAAGGGTAGCAGCCTGATAAGTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGGAATGGCCATGTTGAGGTCATCAAGGCCCTTCTGAGCAGAGAACCAGAACTCGCAACAAGAGTTGATAAGAAGGGGCAGACAGCACTCCATATGGCAGTGAAAGGACAAAACCTTGACTTGGTGGATGAACTTTTGAAATCAAGCACATCATTGGTTAACATGGTGGATGCAAAGGGAAACRCTGCTCTGCATATTGCAACCCGAAAGGGTCGCCTACAGATTGTTCAGAAGATACTAGATTGCCWAGAAATAAACACTGATGTTATCAATAAATCTGGTGAAACTGYGCTGGATACTGCCGAGAAAAACAACCGTAAGGACATTGCYAACTTGCTGCAAGTTCGGGGAGCTAAAAGTGCCAAGTCCATCAAGTCACCTGCCACAAACACAGCCCTCGAGCTCAAACGAACTGTGAGCGACATCAAAAGTGGGGTTCATAACCAGCTGGAACACACATTTAAAACGCAAAGAAGGATGCAAGGCATAGCGAAACGAATCAATAAAATGCAGGCYGAGGGACTTAACAATGCAATCAACTCCAACACTGTTGTTGCTGTCCTKATAGCAACAGTTGCTTTTGCAGCCATATTTAATGTTCCAGGCCAGTATCCTCAGAMCCCAAGTGACCGTCCTCCCAGCTTGTCTCTTGGGGAGGTATACATCGCTCCCAATATCGAGTTCACAATATTCATAATCTTTGATTCTCTCGCCCTCTTCATATCATTGGCYGTTGTGGTTGTCCAAACATCGGTGGTTGTCATCGAGAGGAAAGCGAAGAAACAAATGACGGCCGTTATAAACAAGTTGATGTGGTTAGCCTGTGTGCTAATTTCTGTGTCATTCCTTGCAATGTCATACATCGTTGTGGGGGATAATAAAGGTTTGGCTATAGCAGCAACAGCTCTAGGAACTGTGATTATGGCAGCTACACTAGGAACACTATGTTATTGGGTGATCGCTCACCGACTCGAGGCTGCCAGATTGCGAAGTCTTCGGACAACAATGAGCAGTAGGCAGTCATTATCCATGTCAATGATGTCGCCATCGGAGAACGAGTATAAGACGGTGTATGCAATATAA 1563 0.4389 MKKQLTGIRGDSPLHSAIRAGNMELVLGIISENGEEELKELLSKTNNSGETALYVAAENDNLDIVKELIKYHDIGLAGFKAKNGFDAFHIAAKNGNLEILKVLMEAFPEVSMTVDMSNTTALHTAAAQGYIEVVNFLFEKGSSLISIAKSNGKTVLHSAARNGHVEVIKALLSREPELATRVDKKGQTALHMAVKGQNLDLVDELLKSSTSLVNMVDAKGNXALHIATRKGRLQIVQKILDCXEINTDVINKSGETXLDTAEKNNRKDIANLLQVRGAKSAKSIKSPATNTALELKRTVSDIKSGVHNQLEHTFKTQRRMQGIAKRINKMQAEGLNNAINSNTVVAVLIATVAFAAIFNVPGQYPQXPSDRPPSLSLGEVYIAPNIEFTIFIIFDSLALFISLAVVVVQTSVVVIERKAKKQMTAVINKLMWLACVLISVSFLAMSYIVVGDNKGLAIAATALGTVIMAATLGTLCYWVIAHRLEAARLRSLRTTMSSRQSLSMSMMSPSENEYKTVYAI* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1033 520 ProSiteProfiles Ankyrin repeat region circular profile. 185 212 - -
Amo06g1033 520 ProSiteProfiles Ankyrin repeat region circular profile. 117 144 - -
Amo06g1033 520 ProSiteProfiles Ankyrin repeat region circular profile. 48 70 - -
Amo06g1033 520 ProSiteProfiles Ankyrin repeat region circular profile. 151 174 - -
Amo06g1033 520 Pfam Ankyrin repeats (3 copies) 149 209 IPR002110 GO:0005515
Amo06g1033 520 Pfam Ankyrin repeats (3 copies) 9 74 IPR002110 GO:0005515
Amo06g1033 520 Pfam Ankyrin repeats (3 copies) 79 143 IPR002110 GO:0005515
Amo06g1033 520 ProSiteProfiles Ankyrin repeat profile. 185 212 IPR002110 GO:0005515
Amo06g1033 520 SUPERFAMILY Ankyrin repeat 13 278 IPR036770 -
Amo06g1033 520 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 520 - -
Amo06g1033 520 Gene3D - 1 146 IPR036770 -
Amo06g1033 520 ProSiteProfiles Ankyrin repeat profile. 9 41 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 253 282 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 48 76 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 9 40 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 219 249 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 151 180 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 185 215 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 117 147 IPR002110 GO:0005515
Amo06g1033 520 SMART ANK_2a 83 112 IPR002110 GO:0005515
Amo06g1033 520 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Amo06g1033 520 ProSiteProfiles Ankyrin repeat region circular profile. 9 34 - -
Amo06g1033 520 ProSiteProfiles Ankyrin repeat region circular profile. 83 105 - -
Amo06g1033 520 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Amo06g1033 520 Gene3D - 147 320 IPR036770 -
Amo06g1033 520 Pfam Domain of unknown function 333 449 IPR026961 -
Amo06g1033 520 ProSiteProfiles Ankyrin repeat profile. 83 115 IPR002110 GO:0005515
Amo06g1033 520 ProSiteProfiles Ankyrin repeat profile. 48 70 IPR002110 GO:0005515
Amo06g1033 520 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1033 Amo-Chr6 15085828 15089430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1033 1 520 Miscellaneous Gene Families AT1G07710 63.447 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1033 - - gmx:100802370 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1697 16 33808835 33812537 Amo06g1033 06 15085828 15089430 hybridization