Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1025 ATGTTCCCACTCGCCACTCCCACTGTGGTCTCACCCACACGGGCACCCATGGCCTCTCTCCGGCACCTGTCCCTCAATCCCCACCGTTCATCATCACTCTCTCCATTCTCCCTCTCCTTCCCTCCTTCTTCTTCAACCACCTTTAAGTCCTCATCCATTCGCGCCTCCTCCCAAAACCACCCCAAACCCCAAAACGACGATCTCCTCTCCCGTTTCCTCAAAACCCTAATAAACCCCATCCTCTCGCCAGCCTTCGAAACCACCTGCATCGTCATCTTCGCCACCGCATTCTTCTTCATGCGCCTCCGCCATAACCCCGTCATCGCCGCCCCCCTCACCTCACCCTCCGCCACCGCCGAGTCCTACACCTCCGCCGACCCCGACGCCCCCAACGAGGAGAAAGAAAAGGAAATCGAGGAGCACCTCAGCACAAACCCCTCCGACATCGAAGCCCTCCGCACTCTCATGGAGCTCAAGATCAGAGCGCGCAAAATCGACGAGGCCATTGGCATCATTGACAGGCTCATCGAGCTGGAGCCTCAAGAGTCCGAGTGGCCACTCCTCAAGGCTCACATGCACGTCTACAACGATCAAGTTGACCTTGCACGCGACGTGTTCGAGGAAATTCTCCAGAGAGACCCGCTTCGCGTTGAAGCCTACCACGGCCTCGCAATGACCGCCTTTGAGTCCAAGCTTCCGTTGAATGATTTGTTCAGGAGGATTGAGGTTGCCATGGAGCAGTGCAAGAAGCAGAACAGGAATTCAGAGGTCAGGGACTTCAGGCTCTTGATCGCGCAGATAAAGGTCATGGAGGGAGACCTTGATGCGGCTCTCAAGGCTTACCAGGATCTTGTGAAGGAGGAACCAAGGGATTTCAGGCCTTATCTTTGTCAGGGTATTATATACACCTTGCTGAAGAAGAAAGACGAAGCTGAGAAGCAGTTCAACAAGTTCCGAAGGCTCGTCCCCAAGAACCATCCTTACAAGGAATATTTCGAGGACAATATGTCTGCCACCAAGTTTTTCTCGCAGAAGGTTGAGAGGGAAGGAGCTGCTGCTAGGAGCTGA 1068 0.5459 MFPLATPTVVSPTRAPMASLRHLSLNPHRSSSLSPFSLSFPPSSSTTFKSSSIRASSQNHPKPQNDDLLSRFLKTLINPILSPAFETTCIVIFATAFFFMRLRHNPVIAAPLTSPSATAESYTSADPDAPNEEKEKEIEEHLSTNPSDIEALRTLMELKIRARKIDEAIGIIDRLIELEPQESEWPLLKAHMHVYNDQVDLARDVFEEILQRDPLRVEAYHGLAMTAFESKLPLNDLFRRIEVAMEQCKKQNRNSEVRDFRLLIAQIKVMEGDLDAALKAYQDLVKEEPRDFRPYLCQGIIYTLLKKKDEAEKQFNKFRRLVPKNHPYKEYFEDNMSATKFFSQKVEREGAAARS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1025 355 SUPERFAMILY TPR-like 146 326 IPR011990 GO:0005515
Amo06g1025 355 Coils Coil 234 254 - -
Amo06g1025 355 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 21 348 - -
Amo06g1025 355 SMART tpr_5 149 182 IPR019734 GO:0005515
Amo06g1025 355 SMART tpr_5 292 325 IPR019734 GO:0005515
Amo06g1025 355 SMART tpr_5 258 291 IPR019734 GO:0005515
Amo06g1025 355 Gene3D Tetratricopeptide repeat domain 103 338 IPR011990 GO:0005515
Amo06g1025 355 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 21 348 - -
Amo06g1025 355 MobiDBLite consensus disorder prediction 127 143 - -
Amo06g1025 355 MobiDBLite consensus disorder prediction 114 143 - -
Amo06g1025 355 Pfam Tetratricopeptide repeat 267 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1025 Amo-Chr6 14530762 14532451 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1025 - - adu:107493319 446.047