Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1018 ATGGCCATAGCCGCTACCATTTCTCTTCCTATTACTTCTCCGACGCGCCGCCACAACAGTCTTCTTCGCCATTCTTCTTCCACCACGCTATCCGTTTTGGCCACTCCTCAACGCACTCTTAAATACACTAACCCTCGCATCGTCGCTTCTTCTTCTTCGATGAGCATCGATGCTCCCGTCAAAACCTCAACCAGTTCGTTTCTCGAGCGCAAGGAGTCCGGCTTCCTCCACTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGATTGATAATAGAGACTCTTCGGAGCCAAAGATCACTGCTGAGAAAGCCGTTCAGCTCTGTGACCGTAACTTTGGCGTTGGTGCCGATGGAGTTATCTTTGTTCTTCCTGGAATCAATGGCACTGACTATACCATGAGAATTTTTAATTCTGATGGTAGTGAACCGGAGATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACACGGCAGGCACAGTTTTACCGTACACACTGGTGCTGGTCTCATTGTTCCCGAAATCGTAGAGGATGGGAACGTCAGAGTTGATATGGGGGAGCCGATTCTTAAACCATCAGATGTTCCTACTAAGTTACCTGCAAATAAGGACGGTGCTGTTGTTAAAGCAAAACTAGATGTAGATGGAGTTACATGGAATGTCACTTGTGTTAGCATGGGAAATCCACACTGTATAACATTCAGTAATGAAGAAAGCCAGAATTTGCTTGTTGATGATTTGAAGCTAGCAGAAATTGGTCCAAAATTTGAAAATCATGAGGTGTTCCCTGCACGAACTAACACAGAGTTTGTACAAGTTCTGTCTAATTCTCACCTGAAGATGTGTGTTTGGGAGCGTGGAGCAGGTGCAACTCTAGCCTGTGGAACTGGAGCTTGTGCCACAGTTGTTGCAGCAGTTCTTGAGGGTCGAGCTGGGAGGAATTGCACGGTTGATCTACCTGGAGGGCCTTTGCTGATTGAGTGGAAGGAGGAAGATAATCATATTTATATGACAGGCTCAGCAGACCTTGTGTTTTATGGATCTTTGCCCCTTTGA 1083 0.4635 MAIAATISLPITSPTRRHNSLLRHSSSTTLSVLATPQRTLKYTNPRIVASSSSMSIDAPVKTSTSSFLERKESGFLHFAKYHGLGNDFVLIDNRDSSEPKITAEKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTVHTGAGLIVPEIVEDGNVRVDMGEPILKPSDVPTKLPANKDGAVVKAKLDVDGVTWNVTCVSMGNPHCITFSNEESQNLLVDDLKLAEIGPKFENHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLLIEWKEEDNHIYMTGSADLVFYGSLPL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1018 360 TIGRFAM DapF: diaminopimelate epimerase 77 358 IPR001653 GO:0008837|GO:0009089
Amo06g1018 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 211 344 - -
Amo06g1018 360 SUPERFAMILY Diaminopimelate epimerase-like 219 358 - -
Amo06g1018 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 25 359 - -
Amo06g1018 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 25 359 IPR001653 GO:0008837|GO:0009089
Amo06g1018 360 SUPERFAMILY Diaminopimelate epimerase-like 76 205 - -
Amo06g1018 360 ProSitePatterns Diaminopimelate epimerase signature. 139 153 IPR018510 GO:0005737|GO:0008837|GO:0009089
Amo06g1018 360 Hamap Diaminopimelate epimerase [dapF]. 76 360 IPR001653 GO:0008837|GO:0009089
Amo06g1018 360 Pfam Diaminopimelate epimerase 232 352 IPR001653 GO:0008837|GO:0009089
Amo06g1018 360 Pfam Diaminopimelate epimerase 78 198 IPR001653 GO:0008837|GO:0009089
Amo06g1018 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 50 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1018 Amo-Chr6 14318001 14321101 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1018 K01778 - gmx:100807528 597.045