Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0649 ATGGAAGAAACAGAAGCAGAAGCAGAAGTAGAATCAAACCGAGACAACGTTGAAGTAGCTCCGGCGCTAATCGCGGTTCACCCGGAACAAACCTCCGTCGCCGTCGCCGTTGGACCCGACCTCCGTGTCTTCGACCTCCTTGCTGGTTCCGCTGCTTCTCTAGTCGACGAGTGCGGTGCACCCTTCCACAAGGACTCAATCAGAGCTATCAGATTTGGCTCCAGAGGGAAGCTCTTCGTGTCCGCCGGCGACGACAAAACTGTCAAGATTTGGTCCACGGAATCGTGGCGCTGCGTCTGCACGGTGTCGTCGGAGAAGAGGGTGAGTGCGGTTGCGATAAGTGAGGACGGTTGCCACGTGTGTTTCGCTGACAAGTTCGGTGTTGTGTGGGTTGTGGACGTGGCTGGGTCCCATGAACACGTGGCATTAGGTGATAGGAAACCGACGCCGCTTCTTTCTCACTATTGCAGTATCATCCCTAGCTTGGAATTTTCCCCTGATGGCAGGTTTATTTTAAGTGCTGATCGGGATTCTAAAATTCGGGTTACTAATTTTCCCAAGAAGCCGTTGAATGGAGCTCACGAGATACAAAGTTTCTGCCTTGGTCATACAGAGTTTGTATCCTGCCTTGCCTTTGTTCATGCTCGGGAATGCCCTCAAGGCCTTCTTGTCTCTGGCAGTGGTGATTCAACGGTTCGATTGTGGGATATCTCCTCTGGGGTGCTCCTAGATACTTGTGAGGTTGCTGCTAAGGCAGGACTTCTAGAGTCTAATGGTGAAGCAGAGGAGCATGGCCATGCTGTTACTGATTTGTGCACCACCATCAGTGGTTTGCTTATTGCTGTGGCCATTCAAAGCTTGCAAGGACTAGTATTGTTGAGCTGTGATGTTTCTGCACAAACACTTTCTGTTTCCAAGGTGGTTTCTATTGCGGGAGAGGCCTTTGTTCCTACCTGCTTGGGGTTCAGCCCCGCCGAAGGGAAATTGTGGATGGTAACTGGTGTTTCTAGTTTACCTGCTTGTAACTACCCGCCGTTGTCTCGCGTGCGAGTAATCTCTGCTATTGATGCTGAGCAAGAGCCAGTAGTTTTGGGAGATGATGAGATACCTGGTGGAGAGAAGCTGCTAGAAACGTTGCAAGGAAGTGCTTCTGTTGATGAGAGTGCTTTCTTGGCTGCAGCTGAAGCTGTCAAAACAGCAATGCGCAACCTATTGATTAAAAAGCAATACCCTGCAGATAATAGAGAATCTAGGAAGAAAACTAGAAATGATAGAAAACTGAAAATGTGA 1290 0.4953 MEETEAEAEVESNRDNVEVAPALIAVHPEQTSVAVAVGPDLRVFDLLAGSAASLVDECGAPFHKDSIRAIRFGSRGKLFVSAGDDKTVKIWSTESWRCVCTVSSEKRVSAVAISEDGCHVCFADKFGVVWVVDVAGSHEHVALGDRKPTPLLSHYCSIIPSLEFSPDGRFILSADRDSKIRVTNFPKKPLNGAHEIQSFCLGHTEFVSCLAFVHARECPQGLLVSGSGDSTVRLWDISSGVLLDTCEVAAKAGLLESNGEAEEHGHAVTDLCTTISGLLIAVAIQSLQGLVLLSCDVSAQTLSVSKVVSIAGEAFVPTCLGFSPAEGKLWMVTGVSSLPACNYPPLSRVRVISAIDAEQEPVVLGDDEIPGGEKLLETLQGSASVDESAFLAAAEAVKTAMRNLLIKKQYPADNRESRKKTRNDRKLKM* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0649 429 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Amo06g0649 429 Pfam WD domain, G-beta repeat 63 92 IPR001680 GO:0005515
Amo06g0649 429 Pfam WD domain, G-beta repeat 153 182 IPR001680 GO:0005515
Amo06g0649 429 Pfam WD domain, G-beta repeat 200 236 IPR001680 GO:0005515
Amo06g0649 429 SMART WD40_4 51 92 IPR001680 GO:0005515
Amo06g0649 429 SMART WD40_4 192 236 IPR001680 GO:0005515
Amo06g0649 429 SMART WD40_4 145 184 IPR001680 GO:0005515
Amo06g0649 429 SMART WD40_4 95 133 IPR001680 GO:0005515
Amo06g0649 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 240 - -
Amo06g0649 429 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 30 421 IPR028884 GO:0036265
Amo06g0649 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 245 IPR001680 GO:0005515
Amo06g0649 429 SUPERFAMILY WD40 repeat-like 24 333 IPR036322 GO:0005515
Amo06g0649 429 Gene3D - 59 336 IPR015943 GO:0005515
Amo06g0649 429 PANTHER WD40 REPEAT PROTEIN 4 22 426 IPR028884 GO:0036265
Amo06g0649 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Amo06g0649 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0649 Amo-Chr6 9225546 9228181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0649 63 257 Miscellaneous Gene Families AT5G08390 24.873 2.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0649 K15443 - gmx:100786310 663.299