Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0613 ATGAGGACTTTCTTCACTGCTGATTCATGTAAAGAAGCACACCCAAATGCCTTAAATCCACAGTCTTGGCTTCATATTGAAAGAGGGAAACTTCCCAAGCTGTCATCACATTCCTCTTCTGCCTCAATAGAATCCCTAATCAAGGTTCCACAGCCACCTATACTGCCATTCTATAAACCCATTGATTATGTGGAGGTCTTAGCTCAAATCCATGAAGAACTTGAGTCATGTCCTCCTCAGGAGAGGTCAAATCTATTTCTGTTACAATACCAGGTCTTCAGGGGCCTTGGGGAAGTTAAGTTGATGCGAAGAAGTCTCCGGGGAGCTTGGCAGAGAGCCAACACTGTTCATGAGAAGATTATCTTTGGGGCGTGGTTGAAGTATGAAAAGCAAGGGGAAGAACTAATAGCTGACTTGCTAAGCACTTGTGGTAAATGTGCAAAGGAGTTTGGGCCTGTAGATGTTGCATCTCATCTTCAGTTTGATAGAAACGTAAGTTCCCAGGAGGGAATTTTGACCAACAAGAGTGATGTATCGCAATATGTAATATTCACAATCGAAAATGAGAAGATAGTATGTGATAGACAAAAGATTTCTGAACTTTCAGTACCATTCCATGCAATGCTAAAAGGGTATTTCAGTGAATCACTGTCAGATACTATAGATTTGTCCGAAAACAATATATCTATTTCAGGTATGAGGGCAATAAGTTATTTTAGTTTGGCTGGAAGTTTACCTGAGCTTCCTCCAAATCTTTTGTTGGAGATATTAGTTTTTGCAAATAAGTATTGTTGTGAAAGACTCAAAGATGCTTGTGATAGAAGACTTGCATCTTTAGTTTCCTCCAAAGAAGATGCTGTGGAGCTCATGGAATATGCTCTTGATGAAAACTCTGTCATCCTTGCTGCTTCTTGTCTACAAGTCCTCTTACGTGATCTTCCAAACTGTTTGAATGACAATCGTGTGGTGGATATATTTATTCATGCTAATAGGCAGCAGCTCGAAGTCATGGTTGGGCCAGGATTGTTTGCACTATTCTGCTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACAGCTCATCTCCTTGAAAGGTTAGTTGATTTCTCTGAAAATGACAAGCAGAGATTGCTCGCTTTTCATCAGTTAGGATGTGTAAGATTCTTGAGGAAAGAATATGATGAAGCGCGTGGTTTGTTTGAGGGGGCTGTAAAAGTAGGCCATATGTATTCCATTGCAGGTTTAGCTAGACTGGACTATTTAAAGGGCGAGAAGCTTTTATCTTATGAGAAGCTCAGCTCAGTGATTGCCTCGGTTACTCCACTCGGATGGATGTACCAGGAGAGATCACTATATTGTGATGGTGATATAAGGTGGGAGGACCTTGAGAAAGCAACTGATCTAGACCCTACTCTTATATATCCTTATATGTATAGGGCTGCCAGTTTAATGAGGACACAGAATGCTCAAGCCGCACTAGAAGAAATCAATCGGATTCTTGGGTTCAAACTTTCATTAGAATGCCTGGAACTTCGTTTCTTTATTTATCTGACTCGTGAGGACTACAAAGCAGCTCTTTGTGATATCCAAGCTATTCTTACTCTGCGTCCGGACTATAGAATGTTCGAGGGACGTGTTGCTGCATCCCAACTCTGTACTCTGGTGCGTGAGCATGTTGAACCTTGGACAACAGCAGACTGTTGGGCACGGTTATACGATTGTTGGTCCGCAGTTGATGATATTGGATCTCTATCTGTTATCTACCAGATGCTCGAATCTGATGCAGCGAAAGGTGTTTTATACTTCAGACAGTCATTGCTTCTCTTGAGGCTGAACTGTCCTGAAGCAGCCATGCGGAGTTTACAATTAGCCCGGCAACACGCATCAAGTGAGCACGAACGGCTCGTATATGAGGGGTGGATCTTGTATGACACAGGCCATTATGAGGAAGGGCTCCATAAAGCCGAAGAGTCTATTAGTATTAAAAGGTCTTTTGAGGCCTTCTTCTTGAAGGCTTATGCACTGGCCGACTCTAGTCTAGATTCATCCTGTTCTGCAACTGTTATCTCGCTTTTGGAGGATGCCTTGAAGTGTCCTTCAGATAACTTGCGCAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTTTGTTGACTGTCAGAAGTATGACTCAGCAGCTGATTGCTATATCAATGCCCTTAAAATCCGGCATACCCGAGCCCATCAGGGTCTTGCTCGTGTTCATTATCTCAAACAAGATAAGGCTGCTGCCTATAAAGAGATGACTGAACTGATTCAGAAGGCAAAAAACAATGCATCTGCCTTCGAGAAGAGGTCGGAATACTGCGACCGGGAACTTGCACAGGCAGACCTGGAGATGGTGACTAGATTAGATCCACTTCGGGTGTATCCTTACAGATACCGTGCTGCTGTGTTGATGGACAACCGAAAGGAAGACGAGGCGATCGCTGAACTTTCCAGAGCCATTGCATTTAAAGCTGATTTGCACCTCTTGCATCTAAGGGCAGCATTCCATGAACACAAAGGAGATGTGTTGGGTGCACTCAGAGATTGTCGTGCCGCACTCTCTGTGGACCCTAACCACCAAGAAATGTTGGAACTGCACAGCAGAGTTAATAGCCATGAGCCATGA 2664 0.4317 MRTFFTADSCKEAHPNALNPQSWLHIERGKLPKLSSHSSSASIESLIKVPQPPILPFYKPIDYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLRGAWQRANTVHEKIIFGAWLKYEKQGEELIADLLSTCGKCAKEFGPVDVASHLQFDRNVSSQEGILTNKSDVSQYVIFTIENEKIVCDRQKISELSVPFHAMLKGYFSESLSDTIDLSENNISISGMRAISYFSLAGSLPELPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDENSVILAASCLQVLLRDLPNCLNDNRVVDIFIHANRQQLEVMVGPGLFALFCFLSEVSMNLNSSSDTTAHLLERLVDFSENDKQRLLAFHQLGCVRFLRKEYDEARGLFEGAVKVGHMYSIAGLARLDYLKGEKLLSYEKLSSVIASVTPLGWMYQERSLYCDGDIRWEDLEKATDLDPTLIYPYMYRAASLMRTQNAQAALEEINRILGFKLSLECLELRFFIYLTREDYKAALCDIQAILTLRPDYRMFEGRVAASQLCTLVREHVEPWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLHKAEESISIKRSFEAFFLKAYALADSSLDSSCSATVISLLEDALKCPSDNLRKGQALNNLGSVFVDCQKYDSAADCYINALKIRHTRAHQGLARVHYLKQDKAAAYKEMTELIQKAKNNASAFEKRSEYCDRELAQADLEMVTRLDPLRVYPYRYRAAVLMDNRKEDEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQEMLELHSRVNSHEP* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0613 887 Gene3D Tetratricopeptide repeat domain 599 773 IPR011990 GO:0005515
Amo06g0613 887 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105
Amo06g0613 887 Gene3D Tetratricopeptide repeat domain 360 547 IPR011990 GO:0005515
Amo06g0613 887 Gene3D Potassium Channel Kv1.1; Chain A 174 321 IPR011333 -
Amo06g0613 887 ProSiteProfiles TPR repeat profile. 710 743 IPR019734 GO:0005515
Amo06g0613 887 SUPERFAMILY POZ domain 182 276 IPR011333 -
Amo06g0613 887 Gene3D Tetratricopeptide repeat domain 783 886 IPR011990 GO:0005515
Amo06g0613 887 SMART tpr_5 381 414 IPR019734 GO:0005515
Amo06g0613 887 SMART tpr_5 841 872 IPR019734 GO:0005515
Amo06g0613 887 SMART tpr_5 710 743 IPR019734 GO:0005515
Amo06g0613 887 SMART tpr_5 806 839 IPR019734 GO:0005515
Amo06g0613 887 SMART tpr_5 510 543 IPR019734 GO:0005515
Amo06g0613 887 SMART tpr_5 636 669 IPR019734 GO:0005515
Amo06g0613 887 SMART tpr_5 602 635 IPR019734 GO:0005515
Amo06g0613 887 PANTHER ETO1-LIKE PROTEIN 1 1 887 - -
Amo06g0613 887 SUPERFAMILY TPR-like 383 739 IPR011990 GO:0005515
Amo06g0613 887 Coils Coil 755 782 - -
Amo06g0613 887 SUPERFAMILY TPR-like 693 878 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0613 Amo-Chr6 8760804 8766587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0613 - - gmx:100793740 1534.24