Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0605 ATGGCGCCAGATGCATTGACAGAAGATCAAGTTGCTGAATTCCGAGAAGCTTTTAGCTTCATTGACAAGGACCATGACGGATTTATTAGCGTGGATGAATTGGCAACCATTATTAAATCATTGGAAGGTAATGCAACAAAAGAAGAAATCCAACATATGATTAGTGAAGTTGATATTGATGGGAGTGGGAGCATAGATTTTGAAGAGTTCATCAATATCATGGCTACAAAAATGAAGGAAAATTTGGCTGAGGAGCTAAAAGAAGCATTCAAAGTATTTGATAGAGATCAAGATGGATACATATCAGCCACTGAGCTGAGACAAGTAATGATGAATATGGGAGAGAGGTTGACAGATGAAGAGGCTGAACAAATGATTAGAGAGGCAGATTTGGATGGAGATGGTCAAGTTAGCTATGAAGAATTTGCAAGCGTCATGATGCTTCATTGA 450 0.3844 MAPDALTEDQVAEFREAFSFIDKDHDGFISVDELATIIKSLEGNATKEEIQHMISEVDIDGSGSIDFEEFINIMATKMKENLAEELKEAFKVFDRDQDGYISATELRQVMMNMGERLTDEEAEQMIREADLDGDGQVSYEEFASVMMLH* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0605 149 ProSitePatterns EF-hand calcium-binding domain. 130 142 IPR018247 -
Amo06g0605 149 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Amo06g0605 149 Pfam EF-hand domain pair 84 146 IPR002048 GO:0005509
Amo06g0605 149 Pfam EF-hand domain pair 14 74 IPR002048 GO:0005509
Amo06g0605 149 PANTHER CALCIUM BINDING PROTEIN 3 147 - -
Amo06g0605 149 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Amo06g0605 149 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Amo06g0605 149 Gene3D - 80 149 - -
Amo06g0605 149 SUPERFAMILY EF-hand 3 148 IPR011992 -
Amo06g0605 149 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Amo06g0605 149 PRINTS Recoverin family signature 1 8 - -
Amo06g0605 149 PRINTS Recoverin family signature 53 74 - -
Amo06g0605 149 PRINTS Recoverin family signature 77 96 - -
Amo06g0605 149 PRINTS Recoverin family signature 99 117 - -
Amo06g0605 149 ProSiteProfiles EF-hand calcium-binding domain profile. 117 149 IPR002048 GO:0005509
Amo06g0605 149 PANTHER CALMODULIN-LIKE PROTEIN 9 3 147 - -
Amo06g0605 149 SMART efh_1 85 113 IPR002048 GO:0005509
Amo06g0605 149 SMART efh_1 49 77 IPR002048 GO:0005509
Amo06g0605 149 SMART efh_1 121 149 IPR002048 GO:0005509
Amo06g0605 149 SMART efh_1 13 41 IPR002048 GO:0005509
Amo06g0605 149 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Amo06g0605 149 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Amo06g0605 149 CDD EFh 13 75 IPR002048 GO:0005509
Amo06g0605 149 Gene3D - 1 79 - -
Amo06g0605 149 CDD EFh 85 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0605 Amo-Chr6 8676590 8678529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0605 13 77 EF-hand Containing Proteins AT3G56800 46.154 3.58e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0605 K02183 K13448 gmx:100527005 242.662