Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0436 ATGGGTTCTTCAGAAGCAGCTGCAAAAACCACCAAGGGCGGCAGGGGCAAACCCAAATTCTCAAAGTCCATTTCCAGGTCCTCCAAGGCCGGCCTCCAATTCCCCGTCGGCCGCGTCGCTCGCTACCTCAAGGTTGGCCGTTATGCCCAACGGGTTGGATCCGGGTCACCTGTTTACCTCTCCGCCGTACTCGAATATCTCGCCGCCGAGGTTCTGGAGCTTGCCGGAAATGCTGCGAGAGACAACAAGAAGACTAGGATTATTCCGAGGCACATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTCATGGGATCTGTGACCATTGCGAGTGGTGGAGTTCTGCCGAATATTCACCAGAATTTGTTGCCTAAGAAGGTTGCTGGTGGAAAGGGCAAAGCCGAGATTGGATCTGCTAGTCAGGAGTTTTAG 438 0.5388 MGSSEAAAKTTKGGRGKPKFSKSISRSSKAGLQFPVGRVARYLKVGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPNIHQNLLPKKVAGGKGKAEIGSASQEF* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0436 145 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 Pfam Core histone H2A/H2B/H3/H4 18 97 IPR007125 GO:0003677
Amo06g0436 145 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Amo06g0436 145 CDD H2A 12 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 PANTHER HISTONE H2A 8 143 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 MobiDBLite consensus disorder prediction 1 28 - -
Amo06g0436 145 Pfam C-terminus of histone H2A 100 133 IPR032454 -
Amo06g0436 145 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo06g0436 145 PANTHER HISTONE H2A 8 143 - -
Amo06g0436 145 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Amo06g0436 145 Gene3D Histone, subunit A 9 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0436 Amo-Chr6 6205398 6206102 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0436 K11251 - gmx:100787899 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0064 16 871097 871616 Amo06g0436 06 6205398 6206102 hybridization