Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0414 ATGAAATTCGGGTGCTTGTTCACGGAGTATCTGCAGGAAGAGAGGGAGTTGTTGGATGAGAAATGCGCGCACATTGAATATGTGAGGTTGAAGAAAGTTCTCAAGAGCTGCCAGACCTGCAAACCATTGCACTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCCCTTGTTTCTGATCTTCCTAGCCACCAATTGTGCCAATGTCAATCCTGCCCAGTGTGTGATCAGAAGTTCTTCTCAGAGCTGATGAAGGAAGCATCAGACATAGTAGGGTTCTTCGGTTCAAGGGTTAAGCATCTTCTTGATCTTCATGTTGCGTCTGGAATGCAGAGATATGTATTGCGCCTGCGACAGTGCTTTAAAAATGATAGGCAAGCCCTCGCACAAGAAGGGAGAATTTTAATTGAGTACATTGCAATGAATGCTATTGCCATGAGGAAAATACTTAAGAAATATGATAAAGTTCACAGCTCTGTGAATGGAAAGAATTTCAAATCTAAGATGCACACTGAGCACATTGAACTTTTACACACACCTTGGCTAATTGAATTGGGTGCTTTTTATCTGAATTCTAGTGGACGAGATTGTTGTGAACTCAATGGAGTGTATGGTCACTTTAAGTGTGATCTAAATGTTAGTGACGCTGTAATGACGCTGATTCTTCCAGATTCTATCAAGCTCGAGTATAATCTAACTTGCGCAATATGTCTGGATTTAGTTTTCAACCCCTATGCTTTGGGTTGTGGTCATATCTTCTGCAAGTCATGTGCCTGTTCAGCTGCCTCTGTGATGATGTTCCAAGGCTTTAAAGCTGCAAGTCCTGAGTCTAAGTGTCCCATATGCAGAGAGGATGGAGTTTATTCTAAGAGTGTACGCATGTTAGAACTTGGTCTACTAATGAAAAGAAGGTACAATGATTACTGGAAAAAGAGGCTACTTAGCGAACGAAACAACATGGTGAAGCAATCCAAAGAATACTGGAATATGCAGTCTGCATATGCACTTGGATTACACTAG 1020 0.4147 MKFGCLFTEYLQEERELLDEKCAHIEYVRLKKVLKSCQTCKPLHSSSSSSSSPSPSLVSDLPSHQLCQCQSCPVCDQKFFSELMKEASDIVGFFGSRVKHLLDLHVASGMQRYVLRLRQCFKNDRQALAQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGKNFKSKMHTEHIELLHTPWLIELGAFYLNSSGRDCCELNGVYGHFKCDLNVSDAVMTLILPDSIKLEYNLTCAICLDLVFNPYALGCGHIFCKSCACSAASVMMFQGFKAASPESKCPICREDGVYSKSVRMLELGLLMKRRYNDYWKKRLLSERNNMVKQSKEYWNMQSAYALGLH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0414 339 CDD SPX_BAH1-like 2 163 - -
Amo06g0414 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 336 - -
Amo06g0414 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 334 IPR013083 -
Amo06g0414 339 ProSiteProfiles Zinc finger RING-type profile. 234 283 IPR001841 -
Amo06g0414 339 Pfam RING-type zinc-finger 234 280 IPR027370 -
Amo06g0414 339 ProSiteProfiles SPX domain profile. 1 167 IPR004331 -
Amo06g0414 339 ProSitePatterns Zinc finger RING-type signature. 249 258 IPR017907 -
Amo06g0414 339 SMART ring_2 234 282 IPR001841 -
Amo06g0414 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 336 IPR033326 -
Amo06g0414 339 SUPERFAMILY RING/U-box 226 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0414 Amo-Chr6 5557593 5560411 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0414 K16275 - gmx:100781704 519.235