Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0392 ATGCTGAGCGTGCTGCGAGTGCACCTCCCTTCCGATATTCCCATTGTAGGATGTGAGCTCACGCCTTACGTGCTCCTCCGCCGCCCAGARAAGACCGTTACCACWGATGATGTTTCCGAGACCAATCCCTTAGATGGCCATTTCTTGCGTTACAAGTGGTATCGTGTACAAAGTGATAAAAAGGTTGCTGTTTGTAGCATACACCCATCAGAGCAAGCCACCCTGCAGTGTCTAGGTTGTGTCAAGGCCAAAATACCTGTTGCCAAGAGTTACCATTGCACATCAAAGTGTTTTTCAGATGCATGGCAACATCATCGTGTCTTACATGACCGTGCTGCAAGTGCAATCAATGAAAATGGAAATGAAGAGGAGGAGTTATTTGGGCGTTTTAATAATTCTGGCTCTGGGTCATCAAATACCAGCTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGATCTGCACCATTGTATCCGGCAGCAGTTACACAACGAAGCGGTGGTGAAACGTGGTTTGAAGTTGGACGTTCTAAGACATACACCCCTACTGCCGATGACATTGGATCTTTTACAGTTCTATCATATAACATATTATCTGATGCATATGCCTCAAGCGATCTTTACAATTATTGCCCTTCATGGGCTCTTTCGTGGCCATATCGCCGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCAGATATTATTTGTCTGCAGGAGGTTCAAAGTGACCATTATGAGGAATTTTTTTCCCCAGAACTGGATAAACATGGCTATTATGGTCTATACAAGAGAAAAACAAATGAGGTATACAATGATAGCAACAATAAAATTGATGGTTGTGCAACATTTTTTCGTAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCATTAACAGATGCTATGATCCCCACCACCCAGAGGAAAACTGCCTTGAATAGGCTTGTTAAGGATAATGTTGCACTAATAGTTGTTCTAGAGGCAAAGGTTAACAATCAGCCTGTTGATAATCCAGGAAAAAGGCAGCTTCTATGTGTGGCAAATACTCATGTAAATGTGCAGCAAGATTTAAAGGATGTCAAGCTCTGGCAGGTGCATACATTGTTAAAAGGATTGGAGAAAATAGCTGCTAGTGCAGACATTCCAATGTTGGTTTGTGGAGACTTCAACTCAATTCCAGGAAGTGCTCCCCATGCACTTCTTGCAATGGGGAAGGTAGATCCTTCACATCCCGATTTAGCTGTTGACCCACTTAATATATTGCGCCCTCACAGCAAGTTGGTTCACCAGTTGCCACTGGTCAGTGCATATTCATCCTTTGCAAGAACAATGGGTCTTGGTTATGAACAGCATAAACGTAGACTTGACAGCACAACAAATGAACCTTTATTCACAAATGTCACGAGAGATTTTATTGGCTCTCTAGATTATATATTTTATACAGCGGATTCATTGGTTGTGGAGTCACTATTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGATACCGCACTTCCTTCTCCAGAATGGTCCTCGGATCATATAGCTCTCTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGTTGA 1626 0.4262 MLSVLRVHLPSDIPIVGCELTPYVLLRRPEKTVTTDDVSETNPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPVAKSYHCTSKCFSDAWQHHRVLHDRAASAINENGNEEEELFGRFNNSGSGSSNTSLSASASSASLTNGSAPLYPAAVTQRSGGETWFEVGRSKTYTPTADDIGSFTVLSYNILSDAYASSDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKRKTNEVYNDSNNKIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQRKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTMGLGYEQHKRRLDSTTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0392 541 Gene3D Endonuclease/exonuclease/phosphatase 164 540 IPR036691 -
Amo06g0392 541 SUPERFAMILY DNase I-like 181 535 IPR036691 -
Amo06g0392 541 CDD Deadenylase_CCR4 193 534 - -
Amo06g0392 541 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 189 536 - -
Amo06g0392 541 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 189 - -
Amo06g0392 541 Pfam Endonuclease/Exonuclease/phosphatase family 194 525 IPR005135 GO:0003824
Amo06g0392 541 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 189 536 - -
Amo06g0392 541 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0392 Amo-Chr6 5404740 5409298 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0392 K12603 - pop:7469907 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0374 16 6029478 6030330 Amo06g0392 06 5404740 5409298 hybridization