Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0329 ATGACGGGGCTTCCCAGGGTTCGTGATCACGCATCGCTTCCATCCTCATCGTCTCATAAATCTAATAGCAGTGGTAGCAACGTATTTAGTTTGCTAGTGCGGAGAGAGATCTCGCCTAGAACGAAACACGTGGCAAAATGGAACTGGGGAGAAGCATCTAAATCAAAATCTGGTTCTAGTTCCCGTCCTAAAAATGAAGTAGCAAGAGATGCTAGGCGTGGTCTCCTATCATGGGTTGAAGCCGAGTCATTGCGGCATTTGTCAGCCAAGTATTGCCCTTTGTTGCCTCCCCCAAGGTCTACTATTGCAGCAGCATTTAGTTCAGATGGAAAAGTGCTTGCATCAACACACGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGGAGTTGCTTAAAGGTGCTAATTGGTCATAGAAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCTAGTGGTAGCTTGGATCAAGTAGTTCGTTTATGGGACGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGACCCATTGCATCCATTGCTTTTCATGCCAAGGGGGAAATAATTGCCGTTGCATCAGGACACAAGCTGTATATATGGCACTATAATAAGAAAGGTGAAGCAGCATCACCCGTGTTTGTGTTGAAGACAAGGCGCTCACTACGAGCCGTGCATTTTCACCCACATGCTGCACCATATCTCTTAACTGCCGAGGTCAATGATCTAGATTCCTCAGATTCATCAATGACAGAGGCAACATCACTTGGTTATTTACAATATCCCCCGCCTGCTGTTTTCGTCACAAATATTCATCCCAAGGAAAATGCTAGTTTATCAAGTGAACTACCCTACGTGTCATTACCTTTCCTCTTCATGCCACCATATCCTGTAGATGAGTCAAGACCAGAAGTCCTGCACATTAGTCCCGATGTTGGCTCCAGTAGCATGCAAATTGAATCTTCTGCGACAGGGCAGTTTCAAACGGACCCACATGCAACCGAGCAATACAATACTACAGTGTCTCCCATGGAAACATTCTCCGAGATGCCCACTAGCTCTCAAACTGGTACAGAATATCAAGCTCATGCTACTTTCTCAAATGGAATGGGTATTGGAATCAGTAACCTCAGAATGGATGGTATGGACACTGATGAAACTGAACGTGCTGAAGGATCCCAACATGGAAACTATACAAATGCCCATTCTCTTAATGGGGTGTTACATGGATTGTCTAGACAAAATAACAATCGTGAGGTTCTTCCAGAGTTTGGTCAATTTCCTCAGTTCTTTCCTGCAAGAGACCCAAGTGGATGGGAGCTACCTTTTCTGCAAGGATGGTTAATGGGTCAAAGTCAAGTTGGTGGTCCCTCAATGCTTCCTAACATGGGTGTTAGTCGTGACAGTGTAGGCCAACATATTGGTTCTTCCACATTGAGCTCTAACCATCCCACTTCTAATGCAGATATAGGAATGTCGTCTGGCATTGCCATCCCTGGATCTTCTGTTAGATCAGGTTTACGGAATCATTTTTCACAATACCGTATACCTGTATCTGAATCTGGAAATCTTGCTAGCTCTGCTAGTACCCCACATGATGGGTCTGATATTCAAACCATTATAAGTCGAATCCAGTCAGAACTTGCCACGTCAATGACTGCTGTGACGGCTGCAGAGTTGCCTTGCACCGTGAAGTTAAGAGTATGGTCGCATGACATAAAAAATCCCTGTGCTCCATTAAATGCTGACAGATGCCGTCTGACTATACCGCATGCTGTCCTTTGCAGTGAAATGGGTGCCCATTTTTCGCCGTGTGGTAGATTCTTAGCTGCCTGTGTTGCATGTATGCTCCCACATATAGAAGCTGAACCTGGATTGCAAACGCCAGTACAGCAAGAGCCTGGTATTGCAACATCACCAACTCGTCATCCAATATCAGCACACCAAGTAATGTACGAGCTGCGGATATATTCCTTAGAGGAGGCAACATTTGGAATGGTGCTTGCTTCACGAGCAATCAGAGCCGCACACTGTCTGACATCAATTCAGTTCTCACCTACGTCTGAGCACATACTACTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTAATTGATGGAGAAACGACGTTACCTATATATACAGTATTAGAGGTATATAGAGTGTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTTAATGTGGCTTGCTTTCATCCTTTTGCCGGGGGAGGATTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCAGTATGATGGTGCTCATGCTGCGAATGGCACGGGACCGAGTTACTTTCCTGATGAGACCATCATTGGAATCAGTCAATGA 2400 0.4492 MTGLPRVRDHASLPSSSSHKSNSSGSNVFSLLVRREISPRTKHVAKWNWGEASKSKSGSSSRPKNEVARDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLIGHRRTPWVVRFHPLHPQILASGSLDQVVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYNKKGEAASPVFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPKENASLSSELPYVSLPFLFMPPYPVDESRPEVLHISPDVGSSSMQIESSATGQFQTDPHATEQYNTTVSPMETFSEMPTSSQTGTEYQAHATFSNGMGIGISNLRMDGMDTDETERAEGSQHGNYTNAHSLNGVLHGLSRQNNNREVLPEFGQFPQFFPARDPSGWELPFLQGWLMGQSQVGGPSMLPNMGVSRDSVGQHIGSSTLSSNHPTSNADIGMSSGIAIPGSSVRSGLRNHFSQYRIPVSESGNLASSASTPHDGSDIQTIISRIQSELATSMTAVTAAELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEAEPGLQTPVQQEPGIATSPTRHPISAHQVMYELRIYSLEEATFGMVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGAHAANGTGPSYFPDETIIGISQ* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0329 799 Pfam WD domain, G-beta repeat 130 169 IPR001680 GO:0005515
Amo06g0329 799 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 595 793 - -
Amo06g0329 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 178 IPR001680 GO:0005515
Amo06g0329 799 Gene3D - 82 257 IPR015943 GO:0005515
Amo06g0329 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 174 - -
Amo06g0329 799 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 798 - -
Amo06g0329 799 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Amo06g0329 799 SMART WD40_4 734 774 IPR001680 GO:0005515
Amo06g0329 799 SMART WD40_4 129 169 IPR001680 GO:0005515
Amo06g0329 799 SMART WD40_4 172 209 IPR001680 GO:0005515
Amo06g0329 799 SMART WD40_4 88 126 IPR001680 GO:0005515
Amo06g0329 799 MobiDBLite consensus disorder prediction 1 26 - -
Amo06g0329 799 MobiDBLite consensus disorder prediction 11 26 - -
Amo06g0329 799 SUPERFAMILY WD40 repeat-like 103 245 IPR036322 GO:0005515
Amo06g0329 799 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 798 - -
Amo06g0329 799 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0329 Amo-Chr6 4732912 4739115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0329 103 270 Miscellaneous Gene Families AT5G08390 25.414 1.77e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0329 - K17985 gmx:100817857 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1564 16 29023046 29028589 Amo06g0329 06 4732912 4739115 hybridization