Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0310 ATGCTTCTCAGAAGCTCTTCAACCCCAATTCTTGGTTCCCTCCACTCATCCTTCACAGACAGTCCTAATAACAATAGCATTCACTCTGAATCCTGCCATGCATTCAAGCATCATCTTCCACCATGTGTCCCTCAACATCATCACCAAAAAATCTCTTTCCATCAATCTCCCTTTATGCAGTTCTCATGCACTTCCTCTCCAATCTCACCCTCAATCTCTGAAGGCCAATGCAAAGGCTTCAGAAGAGTTCAGTCTGAAGGAAACTTGGAGGATTTAGCTATTGCTACTTGCAACAACAACAATGAAGACATAGTAGGAGATATTCCTTTCAAGAGATTTTCAGCAAGACCAAAGTGTATGGTACTTGAGACTATTCCCTCTTTCTCTGTTACCAAGCACAAAGGCTTGTGCGAAGAAGATGCAGACGATGAAGAGACCGACAGTGACAGTGACATTGAATATGAGAAAGGAAGTGGAAGCTTAATGAATCTTCAAAAGGGTATGGTACTGTCTGAAGAAGTGAGAGATGGAAGCTGCAGGGTAGGTTTTGCTGAGAGGGAAGAAGAGTTTGGTGGTAAACAAATGTATCTTGCAAGAGGGCTTGGAGTTGATGTCTGCGTGGATGGCATAGGTGGCTGCAGGGGCGGTAGAGGTGGTGGCAGTGGTGGTGGTGGTGGTGATTATAACTCCATGAGCTCTGGAGGAAATGATGGAGATAGATTTGAGGTGGAAGAATATTACAAGAAGATGCTGGAAGAAAATCCTGGGAACGCTTTGTTTCTGAGAAATTATGCTCAGTATTTGTATCAGTGCAAAGAAGACCGTGAAGGAGCCGAGGAGTATTATTCGCGTGCCATCCTAGCAGATCCAAAAGACGGCGATGTTCTATCACAGTATGGGAAGCTAGTTTGGGAGCTACACAAGGATGAAGAACGAGCGTCAGCCTATTTTGAAAGAGCGGTACAAGCCTCTCCTGAAGACAGCCATGTACATGCAGCATATGCAAGTTTCCTTTGGGACACAGAGGAGGGTGAGGATGATTGCAATGATTCAGAGTGTTTGCCACCACAATTTCATCAAGGAGCTATGGCTACTGCTAGTGCCTAA 1107 0.449 MLLRSSSTPILGSLHSSFTDSPNNNSIHSESCHAFKHHLPPCVPQHHHQKISFHQSPFMQFSCTSSPISPSISEGQCKGFRRVQSEGNLEDLAIATCNNNNEDIVGDIPFKRFSARPKCMVLETIPSFSVTKHKGLCEEDADDEETDSDSDIEYEKGSGSLMNLQKGMVLSEEVRDGSCRVGFAEREEEFGGKQMYLARGLGVDVCVDGIGGCRGGRGGGSGGGGGDYNSMSSGGNDGDRFEVEEYYKKMLEENPGNALFLRNYAQYLYQCKEDREGAEEYYSRAILADPKDGDVLSQYGKLVWELHKDEERASAYFERAVQASPEDSHVHAAYASFLWDTEEGEDDCNDSECLPPQFHQGAMATASA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0310 368 PANTHER OSJNBA0004N05.2 PROTEIN 1 353 - -
Amo06g0310 368 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 353 - -
Amo06g0310 368 Gene3D Tetratricopeptide repeat domain 228 346 IPR011990 GO:0005515
Amo06g0310 368 SMART hat_new_1 273 305 IPR003107 GO:0006396
Amo06g0310 368 SMART hat_new_1 308 340 IPR003107 GO:0006396
Amo06g0310 368 SMART hat_new_1 238 270 IPR003107 GO:0006396
Amo06g0310 368 SUPERFAMILY TPR-like 241 343 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0310 Amo-Chr6 4550863 4552923 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0310 - - gmx:100788436 404.445