LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo06g0273	ATGGGGTCTCTGCCTGCATTTCCAGAAGCCAAACAGGGCGTTAGGGACGATTGCATTGACGAAATCACCCTCACGGATCTCTTCAAGGAGCAGCAGAGGCACCTCAACTTCTTCTTCGACCGCATGGATCACTCTCAAACCCTATCCTTCACACGCGCCCTCCTACGCGCCACCGGCACCATCTTCTTCACCGGCGTCGGAAAATCTGGCTTCGTCGCCAACAAGATCTCGCAGACGCTCGTCTCCCTCGGTATCCGATCCGCCTTTCTATCCCCCGTCGACGCGCTCCACGGTGACATCGGAATCCTCTCCGCCGCTGACATCCTCGTCCTCCTAAGCAAGTCCGGCGCCACCGACGAGCTCCTCCGCCTCGTCCCCTGCGCCAGGGCGAAAGGCGCCCGCCTCATTGCCGTCACGTCCGTTCAAGGATGCGCGCTTGAGGCCGTGTGCGACATGAATGTGCATCTGCCGTTGGAAAGAGAGCTCTGCCCCTTCAACCTCGCGCCGGTCACCTCTACCGCGATTCAGATGGTGTTCGGCGACACCGTCGCGATCGCGTTGATGGGAGCAAGGAACCTCAGCAAGGAGGAGTACGCCGGGAACCACCCCGCCGGAAAGATCGGCAAGAGCCTTATCTTCAAGGTGAAAGATCTCATGAAGAAGGAGGATGAGCTTCCCATTTGCAAGGAATCGGATTTGATTATGGATCAACTTGTGGAGCTGACTAGCAAAGGATGTGGATGCCTGTTTGTTGTAGATGATGGCCGTCATCTGATTGGAACATTTACGGACGGAGATCTTCGCCGTACTCTCAAAGCTAGTGGGCAGGGCATCTTCAAACTGACTGTGGGAGAAATGTGCAACAGGAAACCAAGAATTATAGGTCCAGAAGCTATGGCAGTGGAGGCCATGAAGAAGATGGAAGCTCCTCCATCACCAGTCCAGTTTTTGCCTGTGATAAATGATGACAATGTTGTGATTGGGATTATCACGTTGCATGGTTTGGTTTCAGCTGGGTTGTGA	1023	0.5484	MGSLPAFPEAKQGVRDDCIDEITLTDLFKEQQRHLNFFFDRMDHSQTLSFTRALLRATGTIFFTGVGKSGFVANKISQTLVSLGIRSAFLSPVDALHGDIGILSAADILVLLSKSGATDELLRLVPCARAKGARLIAVTSVQGCALEAVCDMNVHLPLERELCPFNLAPVTSTAIQMVFGDTVAIALMGARNLSKEEYAGNHPAGKIGKSLIFKVKDLMKKEDELPICKESDLIMDQLVELTSKGCGCLFVVDDGRHLIGTFTDGDLRRTLKASGQGIFKLTVGEMCNRKPRIIGPEAMAVEAMKKMEAPPSPVQFLPVINDDNVVIGIITLHGLVSAGL*	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo06g0273	340	Pfam	CBS domain	283	338	IPR000644	-
	Amo06g0273	340	Pfam	CBS domain	215	272	IPR000644	-
	Amo06g0273	340	ProSiteProfiles	CBS domain profile.	287	340	IPR000644	-
	Amo06g0273	340	CDD	SIS_Kpsf	59	186	IPR035474	-
	Amo06g0273	340	Gene3D	-	210	338	IPR046342	-
	Amo06g0273	340	ProSiteProfiles	SIS domain profile.	50	193	IPR001347	GO:0097367\|GO:1901135
	Amo06g0273	340	SUPERFAMILY	SIS domain	32	339	IPR046348	GO:0097367\|GO:1901135
	Amo06g0273	340	TIGRFAM	kpsF: sugar isomerase, KpsF/GutQ family	59	330	IPR004800	GO:0005975\|GO:0016853
	Amo06g0273	340	Gene3D	-	21	209	-	-
	Amo06g0273	340	ProSiteProfiles	CBS domain profile.	219	281	IPR000644	-
	Amo06g0273	340	Pfam	SIS domain	55	185	IPR001347	GO:0097367\|GO:1901135
	Amo06g0273	340	PANTHER	-	1	340	-	-
	Amo06g0273	340	PIRSF	KdsD_KpsF	9	340	IPR004800	GO:0005975\|GO:0016853
	Amo06g0273	340	CDD	CBS_pair_SIS_assoc	211	336	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo06g0273	Amo-Chr6	3692204	3694966	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo06g0273	K06041		-	gmx:100805755	536.569

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo16g1459	16	26468271	26471072	Amo06g0273	06	3692204	3694966	hybridization