Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0070 ATGGCGGGGAGTGAAGCGAAAAACTCTGGCTCAAAGCAATCTGGTGCGAAGAAGAAGGAGGTGAAGAAAGAGACTGGATTAGGACTCACGAATCGCAAGGCTGATAACTTCGGAGAGTGGTATTCCGAGGTGGTTGTTAATTCCGAAATGATTGAGTACTATGACATTTCTGGCTGCTACATTCTGAGGCCTTGGGCAATGGCAATATGGGAGATCATGCAAGGATTCTTCGATCCTGAAATAAAGAAGATGAAAATCAAGAATTGCTACTTCCCTTTGTTTGTGTCTCCCGGAGTTTTGGAAAAGGAGAAGGAGCACGTTGAGGGATTTGCACCAGAGGTTGCTTGGGTGACAAAGTCTGGAAAAACCGACTTAGAAATTCCGATTGCCATTCGTCCAACTAGTGAAACTGTCATGTATCCATACTACTCCAAGTGGATTAGGGGACACCGTGACTTGCCTCTGAAACTTAATCAGTGGTGTAATGTTGTTAGATGGGAGTTCAGCAACCCCACACCATTCATCAGGAGTCGAGAGTTCCTTTGGCAGGAAGGACATACTGCTTTTGCAACCAAGGAAGAGGCAGATGTTGAGGTTCTTGAGATATTAGAATTATATAGGCGCATATATGAAGAGTTTTTAGCCGTTCCTGTCATTAAGGGTAAGAAAAGTGAGATGGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGACGTGGAGTACAAGGTGCTACTTCTCATTGTCTTGGCCAAAATTTCGCTAAGATGTTCGAGATAAACTTTGAAAATGAAAAGGGAGAAAAAGCAATGGTCTGGCAAAACTCATGGGCCTATAGTACTCGAACTATTGGGGTGATGGTGATGGTTCACGGTGATGACAAGGGACTAGTGCTGCCTCCTAAAGTGGCCTCAGTCCAAGTTATTGTGATTCCGGTGCCTTACAAAGATGCTAATACTCAAGGAATCTTTGATGCCTGTACTGCAACTGTAAATACATTGTGTGAAGCAGGTATTCGTGCTGAGTCAGATTTTAGAGACAACTATTCTCCTGGATGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCTCTTAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGGCTAGAGCTGTTCGACGTGATAATGGAGCAAAAATAGACATTGCAAATGACAATTTGGTTGATGAAGTTAAGAAGTTACTTGACACTGTTCAACAGAACCTTTTTGATGTTGCAAAACAAAAACGAGATGAATGCATTGAGGTTGTACATACTTGGGATGAATTTGTACAAGCTTTGAACCAAAGAAAAATGATATTAGCTCCTTGGTGTGACGAGGAGGCGGTGGAAGCTGATGTTAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACACTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGTACCAAGTGCTTTGCGTCAGAAAAACCTGCGAAGAAATGGTCATATTGGGGCAGAAGTTACTAG 1533 0.4299 MAGSEAKNSGSKQSGAKKKEVKKETGLGLTNRKADNFGEWYSEVVVNSEMIEYYDISGCYILRPWAMAIWEIMQGFFDPEIKKMKIKNCYFPLFVSPGVLEKEKEHVEGFAPEVAWVTKSGKTDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADVEVLEILELYRRIYEEFLAVPVIKGKKSEMEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDANTQGIFDACTATVNTLCEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQARAVRRDNGAKIDIANDNLVDEVKKLLDTVQQNLFDVAKQKRDECIEVVHTWDEFVQALNQRKMILAPWCDEEAVEADVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASEKPAKKWSYWGRSY* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0070 510 PANTHER PROLYL-TRNA SYNTHETASE 12 510 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 Pfam Anticodon binding domain 314 410 IPR004154 -
Amo06g0070 510 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 92 307 IPR006195 -
Amo06g0070 510 MobiDBLite consensus disorder prediction 1 25 - -
Amo06g0070 510 Hamap Proline--tRNA ligase [proS]. 30 510 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 Pfam Prolyl-tRNA synthetase, C-terminal 437 510 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 SUPERFAMILY C-terminal domain of ProRS 433 510 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 Gene3D - 308 428 IPR036621 -
Amo06g0070 510 CDD ProRS_anticodon_zinc 303 510 - -
Amo06g0070 510 SUPERFAMILY Class II aaRS ABD-related 302 429 - -
Amo06g0070 510 SMART ProRS_C_1_2 437 510 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 130 295 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Amo06g0070 510 TIGRFAM proS_fam_I: proline--tRNA ligase 32 510 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 PRINTS Prolyl-tRNA synthetase signature 88 106 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 PRINTS Prolyl-tRNA synthetase signature 169 180 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 PRINTS Prolyl-tRNA synthetase signature 129 140 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 PRINTS Prolyl-tRNA synthetase signature 159 167 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Amo06g0070 510 CDD ProRS_core_arch_euk 36 297 IPR033721 -
Amo06g0070 510 PANTHER PROLINE--TRNA LIGASE, CYTOPLASMIC-LIKE 12 510 - -
Amo06g0070 510 SUPERFAMILY Class II aaRS and biotin synthetases 35 301 IPR045864 -
Amo06g0070 510 Gene3D Bira Bifunctional Protein; Domain 2 30 307 IPR045864 -
Amo06g0070 510 Gene3D - 431 510 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0070 Amo-Chr6 754639 758893 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0070 K01881 - gmx:100782067 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0967 16 15589114 15593405 Amo06g0070 06 754639 758893 hybridization