Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0042 ATGAGCACTATGAAGTGCAGGAGAGGTACCAATGGATGTCTCAAAAACATGGTTTTGACAACTTTTATGGTGGCCGTGGTTGTTGTCCAACTCCAACATGTGAGTTGCAATGGTGTTGGTGTTGGTGGCAATGGATTTGTTCAACGAAGTGGCACCAACTTTGTTGTGAATGGGAAACGTTTCTACTTCAATGGATTCAATGCTTACTGGCTCATGTACATGGGAACTGACCCATCTACAAGGTCCAAGGTCACAACCACTTTACAACAAGCCTCCATCCATGGCTTAAGGGTTGCAAGAACTTGGGCCTTCAATGATGGACCTAATTACAGAGCCCTCCAGATTTCTCCCGGCACCTATGACGAGAATGTGTTTAGAGGATTGGATTTTGTAGTTTCAGAAGCGCGAAAATATGGGGTGCGGTTGATTCTGAGCTTTGTGAACAATTGGAAAGATTTTGGTGGGAAAAATCAGTATGTGCAATGGGCAAGAGAGCATGGTGGCCAAAATGTTAACAATGAAGATGACTTCTTTAGTAACCCAGTTGCTAAGCAATACTACAAGAACCATATTAAGGCTGTGGTAGGAAGAAGAAACACGATAACAGGGGTGGCATATAAGGATGATCCAACCATTTTTGCGTGGGAATTGATGAACGAACCTCGTTCCCAAAGTGACTACTCAGGCAAAGTTATCAAGGAATGGGTGATTGAGATGGCTGCTTATGTGAAATCCATTGATACAAATCATTTACTTGAAGTTGGACTTGAAGGCTTCTATGATGAAACCAGAAAACAATTCAATCCAGGATTTCAATTAGTTGGCACTGATTTCATTTCTAGCAACCAAGTTCCCCAAGTCGATTTTGCTACTATCCATCTCTATCCGGATGAATGGATGGCAGGGGCGAACGAAGTAGCAAAGGGTGAATTTGTAGACAAATGGATAAAAGCACACATTGAAGACACACAGAAGATTTTGGGAAAGCCCATTGTTGTTGGAGAGTTTGGCAAGTCTTCAAAGACACCAGGGTATAGCGTTGCAGAAAGGGACAGCTACATGAGAAAGATCTATGATGCAATATTCACTAGTGCTAGTAGTGGCGGACCTTGTGCTGGTGGGCTTTTTTGGCAGCTCATGGCCCAACAAATGGATGGCTTCCGAGATGGCAATGAAATTATCTTCCAAGAAGTCCCCTTCTACCACCAAAATTATCGACCAACAATCTTACAGAATGTCATCTATCTCTAG 1251 0.4285 MSTMKCRRGTNGCLKNMVLTTFMVAVVVVQLQHVSCNGVGVGGNGFVQRSGTNFVVNGKRFYFNGFNAYWLMYMGTDPSTRSKVTTTLQQASIHGLRVARTWAFNDGPNYRALQISPGTYDENVFRGLDFVVSEARKYGVRLILSFVNNWKDFGGKNQYVQWAREHGGQNVNNEDDFFSNPVAKQYYKNHIKAVVGRRNTITGVAYKDDPTIFAWELMNEPRSQSDYSGKVIKEWVIEMAAYVKSIDTNHLLEVGLEGFYDETRKQFNPGFQLVGTDFISSNQVPQVDFATIHLYPDEWMAGANEVAKGEFVDKWIKAHIEDTQKILGKPIVVGEFGKSSKTPGYSVAERDSYMRKIYDAIFTSASSGGPCAGGLFWQLMAQQMDGFRDGNEIIFQEVPFYHQNYRPTILQNVIYL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0042 416 Gene3D Glycosidases 43 405 - -
Amo06g0042 416 PANTHER - 21 399 IPR045053 GO:0004553
Amo06g0042 416 SUPERFAMILY (Trans)glycosidases 46 396 IPR017853 -
Amo06g0042 416 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 21 399 - -
Amo06g0042 416 Pfam Cellulase (glycosyl hydrolase family 5) 57 348 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0042 Amo-Chr6 446127 450531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0042 18 397 Glycoside Hydrolase AT5G66460 53.786 1.77e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0042 K19355 - gmx:100787923 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0755 16 12043241 12048119 Amo06g0042 06 446127 450531 hybridization