Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0020 ATGGCCAAGGAAGCTTCTATCATCCTCTTGTTCCTCTCTTTTATCCTTGTCTTCTGTTCAGGTACATTGGTGGGGTTTTCTTTTGCTGAGAGTGAAGACACTGAATCACCCACATTCATCCAGAGAAACAAGATCTACCATGTGAGTTTGGGGGGGTTTGTTCAATTTAGTGAAGGGATATCAAAATATCTTGAATCAGGAACCCAGATAGCTAGAAGAATAGTAGCATTATATGCAGAAAAATTGCAGATAACTGTTGATGGTTTTGCTCAAAAGGAAGAGATCTTATTTCCTTTGTCTCAGAGAGAAAAAGAACTAAGCAAAGTTTATACAAGAAGAATTTTAGATGAGACAAATAACACACCTTCACCAGTTAATCCTACAAATCCAACTTCAGATACACCAGCCATAATCACAGTTCCTTCATCCACACCAGTTACAGTTTCACCCACCAATCCAACCACTTCAGTGCCTATAACAGTTCCCTCTTCCATACCTCCTCCCTCAACCCCCACAAATCCGGCGAATTCACCTGTACCTGTCACGAACCCTGCGGCTTCTTATCCGCCACCATCGGGGATTGTTCCTGTCACAAACAACCAGCCTCCTCCTGCAACAAGCACAAATGCTCCACCAGCAACTCAGGGTCAGGGTCAGGGTCAGAGCTGGTGTGTGGCAAAGAGTGGAGTCTCAGCAACTGCTCTTCAATCAGCACTTGACTATGCTTGTGGAATGCCTGGTGTAGATTGCTCACAGTTACAGCAAGGTGGGAGTTGTTACAATCCAAATTCTGTTCAAAATCATGCTTCTTTTGCATTCAACAGCTATTACCAGAAGAATCCAGCACCAACAAGTTGTGACTTTGGAGGGACTGCTACCTTAGTCAACACCAACCCAAGTACAGGTTCTTGCATTTACCCATCATCGTCGTCGTCGTCATCATCTTTAACCGGAGCGGGTACATCAGGATCTGCTAGCTCACCATCAGGTTTGGGATTGCTAAGCCCTCCTGATGGAGATTCCTCACATTCAGCTGGTGTAAGACCTTTTCTCGGCTGCATGGTTCTGGCTATAACCTTGGTCACCAGAACACTCATTTTAAACCAATAG 1110 0.4459 MAKEASIILLFLSFILVFCSGTLVGFSFAESEDTESPTFIQRNKIYHVSLGGFVQFSEGISKYLESGTQIARRIVALYAEKLQITVDGFAQKEEILFPLSQREKELSKVYTRRILDETNNTPSPVNPTNPTSDTPAIITVPSSTPVTVSPTNPTTSVPITVPSSIPPPSTPTNPANSPVPVTNPAASYPPPSGIVPVTNNQPPPATSTNAPPATQGQGQGQSWCVAKSGVSATALQSALDYACGMPGVDCSQLQQGGSCYNPNSVQNHASFAFNSYYQKNPAPTSCDFGGTATLVNTNPSTGSCIYPSSSSSSSSLTGAGTSGSASSPSGLGLLSPPDGDSSHSAGVRPFLGCMVLAITLVTRTLILNQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0020 369 MobiDBLite consensus disorder prediction 309 331 - -
Amo06g0020 369 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 53 324 IPR044965 GO:0004553|GO:0005975
Amo06g0020 369 MobiDBLite consensus disorder prediction 117 137 - -
Amo06g0020 369 MobiDBLite consensus disorder prediction 199 220 - -
Amo06g0020 369 MobiDBLite consensus disorder prediction 309 340 - -
Amo06g0020 369 MobiDBLite consensus disorder prediction 162 220 - -
Amo06g0020 369 MobiDBLite consensus disorder prediction 162 198 - -
Amo06g0020 369 Gene3D - 219 320 - -
Amo06g0020 369 Pfam X8 domain 223 293 IPR012946 -
Amo06g0020 369 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 53 324 - -
Amo06g0020 369 SMART X8_cls 222 306 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0020 Amo-Chr6 272396 274519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0020 223 307 Glycoside Hydrolase AT4G34480 51.163 5.60e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0020 - - aip:107645980 553.903