Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4304 ATGTCTTTGCTCTCAGATCTCATCAACCTCAACCTCTCCGAATCCGGCACCAAGAAGATCATTGCGGAATACATATGGATTGGTGGATCTGGCATGGACATCAGAAGCAAAGCAAGGACAATCTCTGGTCCAGTGAGTGATCCTTCAAAGCTTCCAAAATGGAACTATGACGGTTCTAGCACTGGTCAAGCCCCTGGTGAAGATAGTGAAGTCATCCTATACCCACAAGCCATCTTTAAGGACCCATTCAGGAGGGGAGAGAATATTCTTGTTATTTGTGATGCATACACCCCAGCTGGAGAGCCAATCCCTACAAACAAGAGACACAATGCTGCCAAGATTTTCAGTCACCCTGATGTAGCCTCTGAAGAACCATGGTATGGTATTGAGCAAGAGTATACTTTGTTACAGAAAGACATTAACTGGCCAGTTGGGTGGCCAATTGGTGGCTACCCTGGACCACAGGGGCCATACTATTGTGGCATTGGTGCCGATAAAGCCTATGGTCGTGACATTGTTGATGCACATTACAAGGCTTGTATCTATGCTGGCATCAACATTAGTGGCATCAATGGAGAAGTTATGCCTGGCCAGTGGGAATTCCAAGTTGGTCCTTCTGTTGGTATCTCTGCTGGTGATGAGGTTTGGGCTGCTCGCTACATACTTGAGAGGATCACGGAAATTGCTGGAGTGGTTGTTTCATTTGATCCCAAGCCTATCCAGGGAGATTGGAATGGTGCGGGTGCTCACACTAACTACAGCACAAAATCGATGAGAAACGATGGAGGGTATGAAGTAATAAAGAAGGCGATTGAGAAGCTTAAATTGAAGCACAAAGATCACATTGCTGCCTATGGAGAAGGCAATGAGAGACGCCTCACTGGAAAACATGAAACTGCAGACATCCACACCTTCTCTTGGGGAGTGGCAAACCGTGGAGCATCAGTAAGAGTTGGAAGAGACACAGAGAAGAATGGAAAAGGTTACTTTGAGGACAGAAGGCCAGCTTCTAACATGGACCCTTATGTCGTAACTTCCATGATTGCGGAGACCACCATCCTCTGGAAGCCATGA 1074 0.4665 MSLLSDLINLNLSESGTKKIIAEYIWIGGSGMDIRSKARTISGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGENILVICDAYTPAGEPIPTNKRHNAAKIFSHPDVASEEPWYGIEQEYTLLQKDINWPVGWPIGGYPGPQGPYYCGIGADKAYGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIEKLKLKHKDHIAAYGEGNERRLTGKHETADIHTFSWGVANRGASVRVGRDTEKNGKGYFEDRRPASNMDPYVVTSMIAETTILWKP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4304 357 PANTHER GLUTAMINE SYNTHETASE 1 355 - -
Amo05g4304 357 Gene3D - 1 104 IPR036651 GO:0004356|GO:0006542|GO:0006807
Amo05g4304 357 Pfam Glutamine synthetase, beta-Grasp domain 23 98 IPR008147 GO:0004356|GO:0006542|GO:0006807
Amo05g4304 357 SMART Gln_synt_C_2 104 352 IPR008146 GO:0004356|GO:0006807
Amo05g4304 357 PANTHER GLUTAMINE SYNTHETASE 1 355 - -
Amo05g4304 357 Pfam Glutamine synthetase, catalytic domain 166 347 IPR008146 GO:0004356|GO:0006807
Amo05g4304 357 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 107 357 IPR008146 GO:0004356|GO:0006807
Amo05g4304 357 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 238 254 IPR027303 -
Amo05g4304 357 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 20 100 IPR008147 GO:0004356|GO:0006542|GO:0006807
Amo05g4304 357 SUPERFAMILY Glutamine synthetase/guanido kinase 104 353 IPR014746 GO:0003824
Amo05g4304 357 ProSitePatterns Glutamine synthetase signature 1. 56 73 IPR027302 -
Amo05g4304 357 SUPERFAMILY Glutamine synthetase, N-terminal domain 20 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Amo05g4304 357 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 105 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4304 Amo-Chr5 112954312 112959053 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4304 K01915 - cpap:110823127 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4304 05 112954312 112959053 Amo15g1744 15 117697848 117702619 hybridization