Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2411 ATGAGTGGCCTTCCGAAGCACGAACGCCGATGGGCGTCAGACACAGTTCCAGAGAAAGTAACAGTTAGCAGCGGGACCTCGCCGGGAACAGAATACAGTTCCTTTGCCGATGATGAGTATGTTGAGGTTACTCTCGATCTTCAAGACGATAACACCATCGTTCTCCGCGGCGTCGAGCCGGTCACAGTCCTCAACATCGACGACGCCGCAGCCACAAGTAGTGGATACGCGACTCCGGCATCCTCCGTCAGATCGCCGACGGGAAGGAGGAGTCCTTCCAATAGGCTGCGGCAGTTCTCTCAGGAGCTGAAGGCCGAGGCGTTTGCTAGAGCGAGGCAGTTCTCGCAAGAGCTGCGGCGGTTTTCATGGAGCCACGGCGGCGGGTGCGAGGCAGCGTTGGCCGCTCGAGATCTCAGGAAGCAACGCGCTCAGCTTGATCGAACTCGCTCCGGCGCTGGCAGAGCGCTCCGTGGACTCAGATTCATCAGCAGTAAATCCAATGGCGTGGATGCCTGGAACGAGGTGAGGAGCAATTTTGATAAGCTCGCCAAGGACGGCTTTCTCCACCGCACCGATTTTGCGCAATGCATAGGGATGAAAGATTCCAAGGAGTTCGCGCTAGAACTGTTCGATGCTCTGAGTCGTAGACGAAGACTGAAGGTTGAAAAGATTAGCAGAGACGACCTATTCGAGTTCTGGTCCCAAATTACTGATCAAAGTTTTGATTCGCGGCTCCAGCTCTTCTTCGACATTGTGGACAAGAATGAAGACGGTAGAATCGCAGAAGAAGAAGTGAAGGAGATAATCGAGTTAAGCGCTTCAGCAAATAAGTTATCCAGACTGAAGGAGCAGGCCGAAGAATATGCAGCTCTTATCATGGAAGAGTTAGACCCTGAAAGACTTGGCTACATCGAGCTATGGCAATTGGAGACCCTTCTTTTACAAAAAGACACGTACCTAAGCTACAGCCAAGCCTTAAGCTACACAAGTCAAGCTTTGAGTCAGAACCTCCACGGGCTAAGGATGAGAAGTCCGATACGTAGGATGAGCCGCAGGTTGCTCTACTATTTGCAAGAAAATTGGAAGAGACTTTGGGTTTTAACATTGTGGATTGCCACAATGACTGGGCTCTTCACGTGGAAGTTCATTCAGTACAAGCAGAAAGATGCTTTTCATATCATGGGTTACTGTCTACTCACGGCCAAAGGCGCGGCTGAGACTCTAAAGTTAAACATGGCACTGATACTCTTGCCCGTATGCAGAAACACTATAACCTGGCTCAGGTCTACTAAGCTGGCTTACGTTGTACCTTTTGATGATAACATCAACTTTCATAAGACTATTGCTGCGGGCATAGTGATTGGTATTATACTTCATGCTGGTGATCACCTTGCTTGTGATTTTCCAAGACTCGTAAATACGACAGAAGCTCTTTATGACAAGTATTTGCAAGGCGTATTTGGCAAACATAAACCAAGTTACGGAGACCTTGTTAAAGGGCCCGAGGGTGTGACTGGAATTCTGATGGTGATTTTTATGGCAATAGCGTTTACACTTGCAACAAAACTGTTTAGGAGAAATCTTATTAAGCTACCTAAACCATTTAATAGACTCACTGGCTTCAATGCTTTCTGGTATTCGCACCACCTCTTTGTCATTGTCTATGTTCTGCTCATCATCCATGGTGTAAAGCTTTACCTCGTGACCAAATGGTACCATCAAACGACATGGATGTATCTTGCAGTTCCAGTTTTACTTTATGCTGGAGAAAGAACACTCAGATTCTTCCGTTCTGGCCTCTACACAGTCCATCTAAAAAAGGTTGCCATTTATCCTGGAAATGTTCTCACATTACAAATGTCAAAGCCACCACAATTTCGTTACAAGAGCGGACAGTACATGTTTGTGCAATGTCCCGCTGTCTCTCCTTTTGAGTGGCATCCCTTTTCTATTACCTCCGCCCCTGACGATGACTATCTGAGTGTTCACATTCGGCAACTGGGTGATTGGACACAGGAGCTTAAAAGGGTATTCTCTGAGGCCTGTGAGCCTCCGGTAGCAGGGAAAAGTGGACTTCTCAGGGCAGATGAAACAACCAAGAAAAGTCTACCCAAGCTGAAGATAGACGGACCTTACGGTGCGCCAGCACAAGACTATAGAAAATATGATGTCCTATTACTTGTCGGTCTTGGAATAGGAGCAACTCCTTTTATCAGCATTTTGAAAGATCTGCTCAACAGCATTGTCAAAATGGAGGAGCTGGCGGATTCAGTCTCTGATTCAAGTAGAGGTTCAGAACATAGTGCTGTGAATACAGACCCGGCATCTCTAAACAAGATTTCTCCAAAGCGGAAGAAAACACTCAAGACTACCAACGCTTATTTCTACTGGGTAACAAGAGAGCAAGGCTCTTTCGATTGGTTTAAAGGGGTCATGAATGAAGTTGCCGATCTAGACCAAAGGGGTGTCATCGAGATGCACAACTACTTGACCAGCGTATACGAGGAAGGCGATGCCAGATCCGCCCTCATCACCATGGTGCAGGCCCTCAACCATGCAAAAAATGGAGTTGATATTGTTTCAGGGACAAGGGTGCGAACTCATTTTGCCAGGCCAAACTGGAAGAAAGTCTTCTCTAAAATATGTTCAAAGCACAGTAATGGAAGAATAGGGGTATTTTATTGCGGTGCACCTGTGTTGGCAAAAGAACTAAGCAAACTCTGCTTTGAGTTCAACGAGAAAGGCACAACGAAATTTGAATTCCACAAGGAGCATTTCTAA 2781 0.4689 MSGLPKHERRWASDTVPEKVTVSSGTSPGTEYSSFADDEYVEVTLDLQDDNTIVLRGVEPVTVLNIDDAAATSSGYATPASSVRSPTGRRSPSNRLRQFSQELKAEAFARARQFSQELRRFSWSHGGGCEAALAARDLRKQRAQLDRTRSGAGRALRGLRFISSKSNGVDAWNEVRSNFDKLAKDGFLHRTDFAQCIGMKDSKEFALELFDALSRRRRLKVEKISRDDLFEFWSQITDQSFDSRLQLFFDIVDKNEDGRIAEEEVKEIIELSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLSYSQALSYTSQALSQNLHGLRMRSPIRRMSRRLLYYLQENWKRLWVLTLWIATMTGLFTWKFIQYKQKDAFHIMGYCLLTAKGAAETLKLNMALILLPVCRNTITWLRSTKLAYVVPFDDNINFHKTIAAGIVIGIILHAGDHLACDFPRLVNTTEALYDKYLQGVFGKHKPSYGDLVKGPEGVTGILMVIFMAIAFTLATKLFRRNLIKLPKPFNRLTGFNAFWYSHHLFVIVYVLLIIHGVKLYLVTKWYHQTTWMYLAVPVLLYAGERTLRFFRSGLYTVHLKKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPDDDYLSVHIRQLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLKIDGPYGAPAQDYRKYDVLLLVGLGIGATPFISILKDLLNSIVKMEELADSVSDSSRGSEHSAVNTDPASLNKISPKRKKTLKTTNAYFYWVTREQGSFDWFKGVMNEVADLDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFSKICSKHSNGRIGVFYCGAPVLAKELSKLCFEFNEKGTTKFEFHKEHF* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2411 926 Pfam Ferric reductase NAD binding domain 722 908 IPR013121 GO:0016491
Amo05g2411 926 CDD EFh 223 269 IPR002048 GO:0005509
Amo05g2411 926 MobiDBLite consensus disorder prediction 1 15 - -
Amo05g2411 926 Gene3D - 145 261 - -
Amo05g2411 926 SUPERFAMILY EF-hand 172 320 IPR011992 -
Amo05g2411 926 Gene3D - 713 926 IPR039261 -
Amo05g2411 926 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 598 718 IPR017927 GO:0016491
Amo05g2411 926 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 720 926 IPR039261 -
Amo05g2411 926 Coils Coil 271 291 - -
Amo05g2411 926 Gene3D Translation factors 591 680 - -
Amo05g2411 926 SFLD NADPH oxidase subgroup (NOX) 106 926 - -
Amo05g2411 926 ProSiteProfiles EF-hand calcium-binding domain profile. 240 275 IPR002048 GO:0005509
Amo05g2411 926 MobiDBLite consensus disorder prediction 1 33 - -
Amo05g2411 926 MobiDBLite consensus disorder prediction 74 94 - -
Amo05g2411 926 SUPERFAMILY Riboflavin synthase domain-like 601 714 IPR017938 -
Amo05g2411 926 Pfam Ferric reductase like transmembrane component 403 559 IPR013130 -
Amo05g2411 926 ProSitePatterns EF-hand calcium-binding domain. 253 265 IPR018247 -
Amo05g2411 926 Pfam FAD-binding domain 602 715 IPR013112 GO:0016491
Amo05g2411 926 CDD NOX_Duox_like_FAD_NADP 607 868 - -
Amo05g2411 926 PANTHER NADPH OXIDASE 30 926 - -
Amo05g2411 926 PANTHER RESPIRATORY BURST OXIDASE2 30 926 - -
Amo05g2411 926 Pfam Respiratory burst NADPH oxidase 144 243 IPR013623 GO:0004601|GO:0050664
Amo05g2411 926 MobiDBLite consensus disorder prediction 17 33 - -
Amo05g2411 926 PRINTS Cytochrome B-245 heavy chain signature 504 527 IPR000778 GO:0016020|GO:0016491
Amo05g2411 926 PRINTS Cytochrome B-245 heavy chain signature 704 717 IPR000778 GO:0016020|GO:0016491
Amo05g2411 926 PRINTS Cytochrome B-245 heavy chain signature 727 744 IPR000778 GO:0016020|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2411 Amo-Chr5 51523480 51530273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2411 9 926 Miscellaneous Gene Families AT1G64060 77.471 0.0 1514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2411 K13447 - gmx:100775988 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2411 05 51523480 51530273 Amo13g3377 13 112036315 112044577 PCT
Amo05g2411 05 51523480 51530273 Amo03g2383 03 101085729 101093778 PCT