Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1955 ATGTTGGGGGGCAACAATGGTAACCCGCTTCCTGTTTTCCTGGACGAGACTCAATTTCGATATCAAACAAATCCAGCAAATCAATTGCAGTTGTTTGGAAACTTACAAGCTGGATGCAGTGTTGATCCAGTTAATTACTTTGGAAATGAGCATATCAGTCCCATGATTCAGCCAAACAAAAGAAGCAGGGAAATGGAAGATATCTCGAAGCAGAAAAGGCTTCAGATTTCCTTAAATTACAATGTCTGCCAAGATGATGCTGATCGATCYGCAAGCATTCCGAATCCTAATCCTGTGTCAACAGGATTAAGGCTTTCATATGATGACGARGAGCGCAACTCATCTGTCACTTCCGCAAGTGGAAGCATGAATGCTGCACCCTCTATCTTGCTGTCACTCGGTGATAATATCAGAAGCGAGCTTGATAGGCAGCAAGAAGAGTTAGACCAATATATTAAACTTCAGAAGGAACAATTGTCAAAAGGAGTGAGGGACATGAAGCAAAAACACATGGCTTCTCTCCTTACTTCGATTGAAAAAGGCGTTACTAAGAAGCTAAAGGAGAAAGATATAGAGATTGATAACATGAACAGAAAAAATAGGGAGCTAGCAGATAGAATAAAYCAGGTGGCTATGGAAGCYCAAAACTGGCACTACAGAGCCAAGTACAACGAGTCAATRGTCAATGTGTTAAAAAACAATCTCCAGCAGGCAATATCTCAAGGAGTTGAACAAGGYAAGGAAGGATTCGGAGACAGCGAAATTGACGACACTGCTTCCTACATAGATCCTAATAACCTCTTCAGCGTTGCAGGCGCACAGCATATGAAATCCACGTACAAGAATTACCAAGGCATGGAGAACCTGAGTTGCCGAGCGTGCAAGGCGAAGGAGGTTTGCATGTTGTTGATGCCTTGTAGGCACCTGTGCTTGTGTAAGGACTGTGATGGATTTATCAATGTTTGTCCTGTTTGCCAATTGATTAAGACTGGAAGTGTGGAGGTATATCTCTCATAA 1017 0.4218 MLGGNNGNPLPVFLDETQFRYQTNPANQLQLFGNLQAGCSVDPVNYFGNEHISPMIQPNKRSREMEDISKQKRLQISLNYNVCQDDADRSASIPNPNPVSTGLRLSYDDEERNSSVTSASGSMNAAPSILLSLGDNIRSELDRQQEELDQYIKLQKEQLSKGVRDMKQKHMASLLTSIEKGVTKKLKEKDIEIDNMNRKNRELADRINQVAMEAQNWHYRAKYNESXVNVLKNNLQQAISQGVEQGKEGFGDSEIDDTASYIDPNNLFSVAGAQHMKSTYKNYQGMENLSCRACKAKEVCMLLMPCRHLCLCKDCDGFINVCPVCQLIKTGSVEVYLS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1955 338 MobiDBLite consensus disorder prediction 86 102 - -
Amo05g1955 338 Pfam Zinc finger, C3HC4 type (RING finger) 288 326 - -
Amo05g1955 338 Coils Coil 186 213 - -
Amo05g1955 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Amo05g1955 338 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 5 337 - -
Amo05g1955 338 Coils Coil 134 161 - -
Amo05g1955 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Amo05g1955 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 5 337 IPR017066 -
Amo05g1955 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 338 IPR013083 -
Amo05g1955 338 MobiDBLite consensus disorder prediction 86 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1955 Amo-Chr5 42290762 42294882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1955 291 326 Miscellaneous Gene Families AT2G21380 41.667 9.27e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1955 K19042 - gmx:100791550 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1955 05 42290762 42294882 Amo15g0147 15 5511825 5516034 hybridization