Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1680 ATGAATAGGGGGAAGCTACTGGACCCACTGCCACCGCTCCTTCTTCCCAACAGGCTCACCTTGCTCCAAGTTTTCATGGCGGTGATGCTCATCTACCTCCTCTTCATGACCTTCGAAATCCCACTCGCATTCAGAGCCGCCACCGTCTCCTCCACCGAAAGAGCCACCACCTTCGTCTTCCTCAGCGACGCATTCCCAGTCCCACTCGCAGAACCCGAATACCAGCCGACTCGACCCGAATTCCAACCCAAAAACAGAACTTTCTTCCCTTCCCCCAAAGTCTCCACATTGAGCTTCAATGACAGCTTCAACGGCGAGTTCTCTGAGCTTCACAAGGTCGCAAAGCAAGCCTGGGTCGCCGGCAGGAGGTTGTGGGAGGATCTCGAATCGGGGAAAGTGGAATCCGCTGCCCGTAGGTTCCGGGTCGAAAACGGGTCGGACAAGTGCCCGAATTCGGTTTCGGTTTCTGGGCCGGAATTCAAGAAGGGTGTGATGGTGTTGCCGTGCGGGATGACGCTTTGGTCGCACGTGACGGTGGTTGGGACGCCGAGGTGGGCACATGCGGAGAGGGACCCGAAGATAGCGGTGGTGAAGGAAGGGGATGAAGCGGTTATGGTTTCGCAGTTCATGATGGAGCTTCAGGGTTTGAAGGCCGTTGAGAACGAGGAACCGCCGAGGATCTTGCATTTCAATCCGAGGGTCAAGGGGGACTGGAGCGGCAAGCCTGTGATCGAGATGAACACGTGCTATAGAATGCAATGGGGGAATGCTCAGAGGTGCGAGGGATGGAAGTCACGTGCCGATGAGGAAACTGTTGATGGACTAGTGAAGTGTGAAAAGTGGATTCGGGATGATGACAGCCACTCGGAAGAGTGGAAGGCAACATGGTGGTTGAACAGACTCATAGGGCGAAAGAAGGAGGTGACTGTAGACTGGCCATATCCTTTTGCAGAGGGGAAACTGTTTGTTCTTACCGTAAGTGCCGGCTTGGAAGGTTATCATATTAGTGTCGATGGGAGGCATGTGACGTCCTTTCCCTATCGCACAGGCTTTGCTCTCGAGGATGCTACTGGACTATCCATAAATGGGGACATTGATGTGCACTCCATATTTGCCGCTTCTTTGCCTACGTCGCATCCTAGCTTTGCTCCACAGATGCATCTTGAAGTTATTCCTCAGTGGAAAGCTCCTCCTCTTCTCAATACAAATGTGGAGCTCTTCATTGGCATCCTTTCTGCCGGCAACCATTTTGCCGAACGAATGGCCGTGAGGAAGTCCTGGATGCAACATAAACTAATCAAATCTTCGCATGTTGTGGCTCGGTTTTTTGTCGCATTGCACGGAAGGAAGGATACAAATCTGGATATAAAGAAAGAAGCAGAGTATTTTGGCGATATTATTATAGTTCCCTACATGGATCATTATGACCTTGTTGTGTTGAAGACTATAGCTATCTGTGAATACGGGATTCGTACAGTGGCTGCTAAGTATATCATGAAGTGTGATGATGACACATTTGTTAGAGTAGATTCTGTTATAAGCGAAGCAAGAAAAGTTCAAAGTGATAGAAGTCTCTACATGGGAAATATGAATTACCACCACAGGCCTCTTCGCCATGGCAAATGGGCTGTAACGTATGAGGAATGGCTAGAGGAAGAGTATCCTACGTATGCTAATGGACCCGGTTACATAGTCTCATCTGACATTGCCCACTTCATTGTTTCCGACTTCGAGAAGCGTAGGCTAAAATTATTTAAAATGGAGGACGTGAGCATGGGAACGTGGGTAGAGCAATTCAACAGCACAAGGCCGGTAGAGTACATACACAGCTTGAAGTTCTGCCAGTTCGGCTGCATCGACGACTACTACACGGCACACTACCAGTCGCCGCGGCAAATGACTTGTATGTGGGATAAGTTGCAACAGCAAGGAAAACCACTCTGCTGCAACATGAGATGA 1959 0.4997 MNRGKLLDPLPPLLLPNRLTLLQVFMAVMLIYLLFMTFEIPLAFRAATVSSTERATTFVFLSDAFPVPLAEPEYQPTRPEFQPKNRTFFPSPKVSTLSFNDSFNGEFSELHKVAKQAWVAGRRLWEDLESGKVESAARRFRVENGSDKCPNSVSVSGPEFKKGVMVLPCGMTLWSHVTVVGTPRWAHAERDPKIAVVKEGDEAVMVSQFMMELQGLKAVENEEPPRILHFNPRVKGDWSGKPVIEMNTCYRMQWGNAQRCEGWKSRADEETVDGLVKCEKWIRDDDSHSEEWKATWWLNRLIGRKKEVTVDWPYPFAEGKLFVLTVSAGLEGYHISVDGRHVTSFPYRTGFALEDATGLSINGDIDVHSIFAASLPTSHPSFAPQMHLEVIPQWKAPPLLNTNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSHVVARFFVALHGRKDTNLDIKKEAEYFGDIIIVPYMDHYDLVVLKTIAICEYGIRTVAAKYIMKCDDDTFVRVDSVISEARKVQSDRSLYMGNMNYHHRPLRHGKWAVTYEEWLEEEYPTYANGPGYIVSSDIAHFIVSDFEKRRLKLFKMEDVSMGTWVEQFNSTRPVEYIHSLKFCQFGCIDDYYTAHYQSPRQMTCMWDKLQQQGKPLCCNMR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1680 652 SMART Gal_bind_lectin_2 167 372 IPR001079 GO:0030246
Amo05g1680 652 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 13 652 IPR002659 GO:0006486|GO:0016020|GO:0016758
Amo05g1680 652 CDD GLECT 167 371 IPR001079 GO:0030246
Amo05g1680 652 Pfam Galactoside-binding lectin 164 371 IPR001079 GO:0030246
Amo05g1680 652 Gene3D - 162 371 - -
Amo05g1680 652 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 163 373 IPR001079 GO:0030246
Amo05g1680 652 Pfam Galactosyltransferase 419 599 IPR002659 GO:0006486|GO:0016020|GO:0016758
Amo05g1680 652 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE-LIKE PROTEIN 13 652 - -
Amo05g1680 652 Gene3D - 396 639 - -
Amo05g1680 652 SUPERFAMILY Concanavalin A-like lectins/glucanases 165 371 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1680 Amo-Chr5 32732097 32736146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1680 22 652 Glycosyltransferase AT1G74800 61.738 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1680 K20843 - gmx:100818349 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1680 05 32732097 32736146 Amo15g0286 15 10390992 10395337 hybridization
Amo05g1680 05 32732097 32736146 Amo05g1680 05 32732097 32736146 PCT
Amo05g1680 05 32732097 32736146 Amo15g0286 15 10390992 10395337 PCT
Amo15g0286 15 10390992 10395337 Amo05g1680 05 32732097 32736146 PCT