Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0452 ATGACCGTCTCCTCTGAAAGCAAGAATTCTCTCACCCAACTAGCTCCACTTGAGGCAGTGCTCTTTGATATAGATGGAACTCTCTGTGACTCTGATCCACTCCACTACTACGCTTTCCGTGAAATGCTCAAAGAGATTGGTTTCAATGGAGGTGTTCCTATAACAGAGGAATTTTTCATTGAGACTGTTGCCGGCAAGCACAATGATGATATTGCCTTGGCTCTCTTTCCTGGTGATCTTGAACGAGGCTTAAAGTTTGTAGATGACAAGGAAGACATGTTCCGGAAATTGGCAAAAGAGCAAGTAAAGCCATTGAATGGCCTTGATAAAGTGAGGGAATGGATTGAAAGTCATGGGCTGAAGCGAGCGGCAGTGACCAATGCTCCAAGAGCTAATGCAGAACTCATGATCTCATTGCTTGGTCTCTCAGACTTTTTTCATGCTGTCATTATTGGTGGAGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACTTGAAAGGTCTTGAAGCTCTGAAAGCATCAAAGGATCACTCATTTGTATTTGAGGATTCTGTTTCTGGGATCAAAGCTGGAGTGGCAGCTGGGATGCCTGTTGTAGGTTTAGCTACTCGAAACCCGGAGCATCTACTGATGGAAGCAAAGCCTGCCTTTCTGATTAAGGATTATGCAGACCCAAAATTGTGGGAAGCTTTGGAAGAACTTGACAAGGCTGTTTCCCCTTCCAGCTTCGGTGCTCCACCTCTGCCACGTCACATGGCCGGTGCCGCTTGCACTCTCCAATTCCGGCCTCTCTTACCGCCTTGCGTTCAAACTGATTCTCCGAGTAACCTTTACTATTCATCATCCTCTTCCATTCCATTTGTTTTATCGATCAACAGAACCAACAGCCCAAGACCCAATTCTCGTTCAGCTCACCTACGCTGCAGCAAGGGTTCTCTTGCTAAACTAGCTCCCCTTGAGGCAGTGCTCTTTGATGTAGATGGAACTCTCTGTGACTCTGATCTGCTCCATTACTATGCTTTCCGCGAAATGCTCCAAGAGAGGAATTCTAGTGAGAATATTTCTGGCACACACGATGAGGATGCTGCCTTGTTTCTCTTTCCTGACGACCGGGAACGGGGTTTGAAGTTCGTAGAAGATAAGGAAGCCATGTTCCGGAAATGGGCAAAAGATCAACTAAAGCCTTTAAATGGCCTCGATAAAGTGATTAAATGGGTTGAAGATCGTAGCCTGAAGCGCGCTGCAGTGACCAATGCTCCAAGACCGAATGCAGAGCTCATGATCTCAAAGCTTGGCCTCTCAGATTTCTTTGATGCTGTCATTATCGGTAGCGAATGTGAACATGGCAAGCCTCATCCAGATCCCTACCTTAAAGGTCTTGAAGCTCTCAAAGCATCAAAGGATCACACATTTATATTTGAGGATTATGATGATCCAAAACTGTGGGCAGCTTTGGATGAACTTGACAAGGCTGGTGCTCGTTGA 1488 0.461 MTVSSESKNSLTQLAPLEAVLFDIDGTLCDSDPLHYYAFREMLKEIGFNGGVPITEEFFIETVAGKHNDDIALALFPGDLERGLKFVDDKEDMFRKLAKEQVKPLNGLDKVREWIESHGLKRAAVTNAPRANAELMISLLGLSDFFHAVIIGGECEHAKPHPDPYLKGLEALKASKDHSFVFEDSVSGIKAGVAAGMPVVGLATRNPEHLLMEAKPAFLIKDYADPKLWEALEELDKAVSPSSFGAPPLPRHMAGAACTLQFRPLLPPCVQTDSPSNLYYSSSSSIPFVLSINRTNSPRPNSRSAHLRCSKGSLAKLAPLEAVLFDVDGTLCDSDLLHYYAFREMLQERNSSENISGTHDEDAALFLFPDDRERGLKFVEDKEAMFRKWAKDQLKPLNGLDKVIKWVEDRSLKRAAVTNAPRPNAELMISKLGLSDFFDAVIIGSECEHGKPHPDPYLKGLEALKASKDHTFIFEDYDDPKLWAALDELDKAGAR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0452 495 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 17 225 - -
Amo05g0452 495 Gene3D Putative phosphatase; domain 2 32 100 IPR023198 -
Amo05g0452 495 Gene3D Putative phosphatase; domain 2 335 393 IPR023198 -
Amo05g0452 495 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 310 476 - -
Amo05g0452 495 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 320 476 - -
Amo05g0452 495 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 17 225 - -
Amo05g0452 495 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 90 201 IPR006439 -
Amo05g0452 495 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 4 238 - -
Amo05g0452 495 Gene3D - 18 225 IPR023214 -
Amo05g0452 495 SFLD Haloacid Dehalogenase 320 476 - -
Amo05g0452 495 CDD HAD_BPGM-like 19 204 - -
Amo05g0452 495 Gene3D - 324 476 IPR023214 -
Amo05g0452 495 SUPERFAMILY HAD-like 14 234 IPR036412 -
Amo05g0452 495 Pfam Haloacid dehalogenase-like hydrolase 20 201 IPR041492 -
Amo05g0452 495 Pfam Haloacid dehalogenase-like hydrolase 323 476 IPR041492 -
Amo05g0452 495 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 310 476 - -
Amo05g0452 495 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 4 238 - -
Amo05g0452 495 SUPERFAMILY HAD-like 316 476 IPR036412 -
Amo05g0452 495 CDD HAD_BPGM-like 322 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0452 Amo-Chr5 5305097 5310658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0452 - - gmx:100793483 437.958