Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0430 AAAACTGTGGCATCTTGCTTCGGCGCATTTTCCCTCTTTAATTTACAAAAAATGGGTTGTTTTTGCTCCAAAGTAAGTAAACAAATTGCCGTGGAAGAAGAAGATCCAATGAGTCTTTCGAAGCAAACAGTTTTTAGTGTTAGTGAGGTTGAAGCACTGTTTGAGCTTTTTAAACGTATTAGTGGATCTGTCATTGATGATGGACTAATAAGCAAGGAAGAATTTATATTGGCGATTTTCAATAATAAGGAAAAAGACAATCTCTTTGCAAGTCGAATCTTTGATTTATTTGATGTAAAGAAGAAAGGAGTTATCGACTTTGGCGATTTTGTTCGAGCACTCAATGTTTTCCACCCACATACACCTCAAAAAGTCAAGATAGATTTTTCATTTAGACTCTACGATTTGGACAAATCAGGTTTTATAGAGCGCCATGAGGTAAAGGAAATGATACTTGCACTTCTCACTGAATCTGAAATGAAGCTACCGGATGAGATGATAGAAACAATTATAAACAAGACTTTCTTGGCGGCAGACCCAAACCAAGATGGGAAAATAGACGAGAATGAATGGGAGGCTTTTGTTACAAAAAATCCATCATTGCTGAAAATAATGACATTACCATACCTGAGTGACATAACAACAACATTCCCAAGTTTCGTATTTCACTCTAAGGTTGATGACAACGTTGGTGCTTGA 699 0.3648 KTVASCFGAFSLFNLQKMGCFCSKVSKQIAVEEEDPMSLSKQTVFSVSEVEALFELFKRISGSVIDDGLISKEEFILAIFNNKEKDNLFASRIFDLFDVKKKGVIDFGDFVRALNVFHPHTPQKVKIDFSFRLYDLDKSGFIERHEVKEMILALLTESEMKLPDEMIETIINKTFLAADPNQDGKIDENEWEAFVTKNPSLLKIMTLPYLSDITTTFPSFVFHSKVDDNVGA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0430 232 ProSitePatterns EF-hand calcium-binding domain. 135 147 IPR018247 -
Amo05g0430 232 Gene3D - 35 229 - -
Amo05g0430 232 ProSitePatterns EF-hand calcium-binding domain. 179 191 IPR018247 -
Amo05g0430 232 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Amo05g0430 232 PRINTS Recoverin family signature 93 114 - -
Amo05g0430 232 PRINTS Recoverin family signature 186 206 - -
Amo05g0430 232 PRINTS Recoverin family signature 140 158 - -
Amo05g0430 232 PRINTS Recoverin family signature 31 45 - -
Amo05g0430 232 PANTHER CALCINEURIN B 18 230 IPR045198 GO:0005509|GO:0019722|GO:0019900
Amo05g0430 232 SUPERFAMILY EF-hand 39 221 IPR011992 -
Amo05g0430 232 PANTHER CALCINEURIN B-LIKE PROTEIN 18 230 - -
Amo05g0430 232 SMART efh_1 170 198 IPR002048 GO:0005509
Amo05g0430 232 SMART efh_1 126 154 IPR002048 GO:0005509
Amo05g0430 232 SMART efh_1 89 117 IPR002048 GO:0005509
Amo05g0430 232 Pfam EF-hand domain pair 126 194 IPR002048 GO:0005509
Amo05g0430 232 ProSiteProfiles EF-hand calcium-binding domain profile. 166 201 IPR002048 GO:0005509
Amo05g0430 232 ProSiteProfiles EF-hand calcium-binding domain profile. 122 157 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0430 Amo-Chr5 4956378 4957989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0430 18 228 EF-hand Containing Proteins AT4G17615 69.668 4.06e-105 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0430 K06268 - sly:100820708 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0430 05 4956378 4957989 Amo01g1580 01 34001155 34005994 PCT
Amo01g1580 01 34001155 34005994 Amo05g0430 05 4956378 4957989 PCT